Pogonomyrmex barbatus (red harvester ant): 105428544
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Entry
105428544 CDS
T04903
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105428544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105428544
Enzymes [BR:
pbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105428544
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105428544
mRNA degradation factors
3'-5' decay
Ski complex
105428544
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4_beta-barrel
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
105428544
NCBI-ProteinID:
XP_011639222
UniProt:
A0A6I9WAD1
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MTESTQFVEPPPIWPDIRSELREYIECPERLPIHQLDNTQCYWLRKSNVLSLLEFDLAPI
NTTLKFDRDPITGKIGEIQESVLQGAGETARNSMSMTRAPGPLTDGVRGNPSNIPFWPGG
FDEPKILQTDVVDDIDFEKDLRTLAKGFSSGLEFKSDNCTPINCTWNEAEDSEKFVSEEL
EKLKIYNDNNINLMSVIHEEGNLLGSWSSKNQIKEPKKENVQTSDNNIPFIDDNPILSKD
IDIPVLKISEKQKELAKTEWAEQLDVSAPVTDFDKRVPDPAITFNYELDIFQKQAILKLE
ENSNVFVAAHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYRDFKRKFESVGLL
TGDLQINQTASCLIMTTEILQSMLYCASDILRDLEFVIFDEVHYINNEDRGHVWEEIVIL
LPQNINIVMLSATVPNPIIFADWVGRIKKRKMYVISTLKRPIPLLHYLYTGTDGKTKDDK
FLVLDGNGLFLLDGWYKATNASDKKKDKIPKDFRRKIQMTPKQEEVLWRAFISHLQNNDM
LPVVVFTLSRKRCDMNAATLRNLDLTTAREKHQVHVFFQSNIKHLKGSDRELPQVLMMQE
LLEKGVGIHHSGILPILREIVEMLFQNGVVKLLFATETFAMGVNMPARTVVFDSIRKYDG
NNFRTLYPTEYIQMAGRAGRRGHDTTGTVIVMCRNDVPHFNDLKPMMCGEPQTLESKFKV
TYSMLLNLRRVNESVTVEAMMRKSFKESPLASQEATYSNELRKIERELLNLPALTEMQKK
LSAFYQKAVDYLEDVKFLNPYLFDSKKTAKNLTEGRILLVSYENHYNKLALLLQVLYLKN
STQYKALILKDATASTSEAGEFKSPQIFKKWCEIISLTKKEIFVPNINPSHEVVTLSAWH
ILKITNCQIKVDCSLILNDWEKRQISRFKNDPPGQTCQTAVQELTSLSFNASTNIHVLQP
YIEPSSKTDFKLRIQHKDKLKASLNDMKCMEIPNFEEQFRPVFERNQLEDKKRQLQLKLS
DEGMALYPDYLNMVALLKHLRYIDNDERVALKGRVALQMGSNELLITELILKNVLTVLQP
AEIVALLSALIFQQRTDVEPKLTPSLTNACMIMNEVHGELEHLEQYYQLSTLQPLNFGLV
EVVYEWAQAKSFAEIMKMTDVQEGIIVRCIQQLGETLRDVKNAAVTIGDPVLKEKMEEAS
TAIKRDIVFAASLYTQD
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatcaacgcagtttgtcgagccgccacctatttggcctgatatcagatcagaa
ttacgggaatatattgaatgtcctgaacgattgcctatacatcagctggataatactcaa
tgttactggctacgcaaatctaatgttctttcattgttggaatttgacttagctccaatt
aacaccacactgaagtttgatcgtgatccaataacaggtaagattggtgaaatacaagag
agtgtcttgcaaggtgcaggagaaacggcaaggaattctatgtctatgactcgtgcgcct
ggtccacttacagatggagttcgaggtaatcctagtaatattccattttggcctggtggc
tttgatgaacctaaaatacttcagactgatgtcgtggacgatattgattttgaaaaggat
ttaagaacgttagccaaaggattcagctcaggattagaattcaaaagtgacaattgcaca
ccaattaattgtacatggaatgaagcagaagattctgaaaaattcgtatctgaagaactc
gaaaaactaaaaatctataatgataataatataaatttaatgtctgttatacatgaggaa
ggaaatttgcttggttcttggtcttcaaagaatcaaatcaaagagccaaagaaagagaat
gtacaaacttcggataataatattccttttatagacgataatcccattttatccaaagat
atagatatacccgttttgaaaatatccgagaaacaaaaagaacttgcaaagacagaatgg
gcagaacagctggatgtatcggcaccagtaactgactttgacaagagagtacctgatcca
gcaattacattcaattatgaattggatatttttcaaaagcaagctattcttaaattggaa
gagaacagtaatgtctttgttgctgcacatacatcagcagggaagactactgttgcagaa
tatgctattgcattgagtcaaaagcatatgacaagagtaatttatacgtctcctataaaa
gcattatcaaatcagaaatatcgtgattttaagaggaaatttgaaagtgttggactacta
acaggtgatttgcaaataaatcaaactgcttcatgtctaatcatgacaacagagattcta
caatcaatgttgtattgtgcatccgatattttacgagatttagaatttgttatatttgat
gaagtgcattatataaataatgaagatagaggtcatgtatgggaagaaatagtcattctg
ttaccacaaaatattaacatagtaatgttatctgcgactgtaccaaacccgataatattt
gcagattgggttggtcgtatcaaaaaacgaaaaatgtatgtaattagcactttgaaaaga
ccaatacctcttttacattacttgtatactggcaccgatggtaaaactaaggatgacaaa
ttcttagtccttgatggcaatggcctttttttattagatggatggtacaaagcaacgaac
gcatctgataaaaaaaaggacaaaatcccaaaggattttagaaggaaaattcaaatgaca
cctaaacaagaagaagtattatggagagcatttataagccatcttcagaacaacgatatg
ttacctgtcgtcgtatttactttgtcaaggaaacgctgtgatatgaatgctgctacgtta
agaaatctcgatttaacgaccgcaagagaaaagcatcaagtgcatgtatttttccaatct
aacataaaacatttgaaaggtagcgacagagaattaccgcaagtacttatgatgcaagaa
cttttagagaaaggcgtgggtatacatcacagtggaatattaccaattttgagagaaatc
gtagaaatgttgtttcagaatggagttgtaaagttattattcgcgacagaaacttttgcc
atgggagttaacatgccagcacgtacagtggtgttcgattctatacgaaagtacgacggc
aataattttcgtactttgtatccaactgaatacatacagatggctggtcgtgctggacgg
cgaggtcacgacaccacgggaactgttatagtaatgtgcagaaatgatgtgccacacttt
aacgacttgaaacctatgatgtgcggagaaccacaaacattagaatcgaagtttaaagtc
acatattctatgcttctgaatttgagaagggtaaatgaatctgtcactgttgaagcaatg
atgcgcaagtctttcaaagaatcaccgttagcctcgcaagaagcaacatatagcaatgag
ttacgaaaaatcgaacgcgagttgttaaatttgccggctttgactgaaatgcaaaagaag
ctttctgcgttctatcaaaaagcggtcgattatctggaagatgttaaatttctgaatcct
tatttgtttgactccaaaaaaacagcaaagaatttaaccgaaggcagaatcttgctagta
tcatacgaaaatcattataataaattagccctattattgcaagttttatatctcaaaaat
tctacacaatacaaagcgttgatacttaaggatgcgaccgcgtccacttccgaagctggt
gaattcaaaagtcctcagatattcaagaaatggtgcgagattattagtctaacgaaaaaa
gagatatttgtcccaaacattaatccgtcgcatgaggttgtgactttatccgcatggcac
atattaaaaataaccaactgccagataaaagtcgattgctctctgatattaaatgattgg
gaaaagaggcaaatctcacgatttaaaaatgatccaccaggacaaacatgtcagacagcg
gtccaagaattgacttctctatcatttaatgcttccaccaatatacatgttctacagcca
tatatcgaaccttcatcgaaaactgattttaaattgagaatacaacataaagacaaatta
aaagctagtcttaacgacatgaagtgcatggaaataccaaattttgaagaacaatttaga
cctgtattcgaacgaaatcaactcgaggataaaaagcgacagcttcaacttaaacttagt
gatgaaggaatggcgttatatccggattatttgaatatggtagcactcctcaaacatttg
agatacatagataacgatgaaagagtggccttaaaaggaagagttgcgctacaaatgggt
agtaatgaattgctgataacagaattgattctcaaaaatgtattaactgttttacaaccg
gcggaaatagtagcgttattatcagcactaattttccaacaacgtacggatgtcgaacct
aaactcacgccaagtctcactaatgcttgcatgataatgaacgaggtgcatggagaatta
gaacatttagagcaatattatcaattgtcaacattgcaaccattgaattttggcttagta
gaagttgtttatgaatgggcgcaagctaaatcgttcgccgaaatcatgaagatgacggat
gtccaggaaggaattatagttcgttgcatacagcaacttggcgaaaccttgcgagacgtt
aaaaatgcggctgtaactataggtgatccggttttaaaagaaaagatggaggaagcatca
accgcaattaaacgcgacatagttttcgccgcatctttatatactcaagattga
DBGET
integrated database retrieval system
