Pogonomyrmex barbatus (red harvester ant): 105428547
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Entry
105428547 CDS
T04903
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03013
Nucleocytoplasmic transport
pbar03015
mRNA surveillance pathway
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105428547
09122 Translation
03013 Nucleocytoplasmic transport
105428547
03015 mRNA surveillance pathway
105428547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105428547
03041 Spliceosome [BR:
pbar03041
]
105428547
Enzymes [BR:
pbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105428547
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105428547
Spliceosome [BR:
pbar03041
]
Complex C
Other components
EJC/TREX
105428547
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105428547
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105428547
NCBI-ProteinID:
XP_011639233
LinkDB
All DBs
Position
Unknown
AA seq
346 aa
AA seq
DB search
MDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRELAFQISKEYERFSKYMSH
VKVGVFFGGLPIQKDEEVLKTVCPHIVVGTPGRILALVRNKKLNLKHLKHFILDECDKML
ELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLNGL
QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMT
QEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG
TKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASYSKFHF
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggatatcctgtgccaagcaaaatcgggtatggggaaaactgctgtgtttgtgttagct
actcttcaacagttggagctgacggagaatcaagtctatgtcctagtaatgtgtcatact
cgtgaactggcttttcagattagtaaggaatacgagaggtttagcaaatacatgtcacat
gtaaaagttggtgtgtttttcggcggtttacctattcaaaaagatgaagaagtcttaaag
accgtatgtcctcatatcgttgtcggcactccgggtcgtatccttgctcttgtacggaac
aagaaactcaatctaaaacacctgaaacattttattcttgatgaatgcgacaaaatgctg
gagttattagatatgcgccgagacgtacaggaaatattcaggagcactccgcacagtaag
caagtcatgatgttcagtgccacgctgtccaaggagatacgtcctgtctgcaaaaagttt
atgcaagatcccatggaggtctatgtcgacgacgaagcaaagctcaccttgaatggtctc
cagcaacattacgttaaattgaaggagaacgagaagaacaagaagttatttgaactactc
gatgttcttgaatttaatcaggttgtcatatttgtgaagtctgtacaaagatgtatggct
ttagcgcaactattgacggaacagaattttcctgcaattggaattcaccgcggcatgacg
caagaagagcgactgtccagatatcaacagttcaaagattttcaaaaacgtatattggtg
gcgacgaacttgtttggacgaggtatggatatagaacgtgtaaacattgtattcaactat
gatatgccagaagactccgacacatatctgcatagagtggcacgcgctggtcgttttggt
acaaagggtcttgccatcacattagtaagcgatgaaagcgatgctaagattttgaatgat
gttcaagaaaggtttgacgtaaatatcacagaattaccggacgaaattgatctagcttca
tacagtaagtttcacttt
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integrated database retrieval system
