Pogonomyrmex barbatus (red harvester ant): 105428782
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Entry
105428782 CDS
T04903
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03013
Nucleocytoplasmic transport
pbar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105428782
03015 mRNA surveillance pathway
105428782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105428782
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105428782
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
105428782
NCBI-ProteinID:
XP_011639579
UniProt:
A0A6I9X538
LinkDB
All DBs
Position
Unknown
AA seq
790 aa
AA seq
DB search
MSDTRRRRKSNQSCGSDDLSDSYEELNATKETQSSEQTDGHQDSECDIYESDSDVESQEG
GEQRESGDGQEEEKPQKKLDDDEDRRNPQYIPKRGTFYEHDDRTTDEVTDNNTEQQTNVK
ETKEKKVWKDKEDKWDHDRYNDEEQAPKRPEELIATYGYDIRNEEGPPRARRRRRYGRGP
NKYTRNWEDEDAYGKTTLGRGNNRRFHKNNEDFPALGNNKNTSNKAEEPVISSAWYSSKN
KTQNKTQNFPPLQSQQDNTKTKPAVVSNTTTNENKASDESTNTSWKKDGRHAIQNQNTNG
NTSSGNDAEKLTNIKPSPRENSKRNIQESVSLAASRSRGRGFKSNANNNIVTNRIVENKS
KGRGPGPIIVDNRRNNTVQHNEEHQLSHDMKQLNMNDGTQYHQPGRHNKGFFTSSNQHRS
NTVPPRMQQQQQPQQQQSHQQQTMQQQQQQQDSSGNRPKRYSSLRQRPTISETSAQQNYP
SQHAQHGYFPPQAGNSRAVLESQGYPQGHFEQSSPVAPATAPMAGQPVISLPPGGQPASY
APPPFLVPPPQFIPPQTAPPSIINYVPGPNGPTFPPNFQGYQGYNPSVQPQGPPPPQELF
QPQGCTYYSPAQQQQQQQQVVPPRRPKAAIPILPPPDNQQSGRGRGRSTQQYQNNQSIGN
AQQTEQEVKSGNAVESDEKSVPGQFDSAQVEQSNQEFQKNQAPDVVRTVNDMDEKVETVS
NIDTHIKIDAPPIKKDNLDDSISVKELLEATSNEKNTVSHSSTTLASVETELGNIESAIP
ENTIVEKAAA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacacacggcgacgtcgtaaatccaaccagtcgtgcggctcggacgatctctcg
gattcgtacgaggaattgaacgcgacgaaggagactcagagtagcgaacaaactgatgga
catcaagattcagaatgtgacatttatgaaagtgattcagatgttgaatcacaggaaggt
ggagagcaacgtgagagtggagatgggcaagaggaagagaaaccacagaaaaagttagat
gatgatgaagatagacgaaatccacagtatataccaaaacgtggaacattttatgaacat
gatgatcgtacaactgatgaagtaactgataataacacggaacagcaaacaaatgtaaaa
gagaccaaggagaagaaggtatggaaggataaggaagataaatgggaccatgatcgatac
aatgacgaagaacaagctccaaagagacctgaggaattgatagcgacttatggttatgat
attagaaacgaagaaggaccacctagagctagaaggagaagaagatatggtcgtggacct
aataaatacacaagaaattgggaagacgaagatgcttatggaaagactacacttggtaga
ggaaacaacagacgctttcataaaaataacgaagattttcctgctcttggtaataataag
aacacttcgaataaagcagaagaacctgtaatttcatcagcatggtacagtagcaaaaac
aaaacacaaaataaaacgcaaaatttcccgccgcttcagtctcaacaggataatacaaaa
actaagcctgcagttgtttccaatacaaccacaaatgaaaataaagcatcagatgaatct
actaatacatcttggaaaaaagatggcagacacgctattcaaaatcaaaatactaatgga
aatactagttctggcaatgacgcggaaaaattaactaatattaagccatcaccgagagag
aatagcaagaggaatatccaagagtctgtgagcttggccgcgagtaggtcgcgtggaaga
ggtttcaaatccaatgctaataacaacatagtcactaacagaatagttgagaataaatca
aaaggacgcggtccgggtccaattatagtagataatagaagaaataatactgtgcaacat
aatgaagagcatcaactttctcatgatatgaaacaactcaatatgaatgatggtactcaa
tatcatcagcctggaagacataataaaggcttttttacatcttccaatcaacatagatca
aatacagtaccacctagaatgcagcaacaacagcaaccacagcaacaacaatcacatcag
caacaaacaatgcagcaacaacagcaacaacaagatagttctggaaacagacctaaaaga
tactccagtcttcgtcaacgtcctacgatttcagaaacttccgcgcaacagaattatcca
tctcaacatgcccaacacggatattttccacctcaagctggaaactcaagagctgttctg
gaatctcaaggttatccccaaggtcatttcgagcaatcttctccagtcgctccagccaca
gcacccatggcaggacaacctgttatttctttaccacctggtggacaacctgctagctat
gcgccaccgccattcttagtaccgccaccgcaattcatacccccacaaacagcacctcct
agcataattaattacgttcctggaccaaatggtccgacgttcccaccaaactttcaaggt
tatcagggatataatccttctgtacagcctcagggtccaccgccgcctcaagagttgttc
caaccgcaaggatgtacttactacagtcccgcacagcaacagcagcaacaacagcaggtg
gtacctccgcggcgaccgaaagcggcgatacctattcttccgccacctgataatcagcag
agcggtagaggaagaggaaggagcactcaacagtatcagaataatcaatctattggtaac
gcgcaacagactgaacaagaagtcaagagtggtaatgcagtggaaagtgatgagaaatcc
gtgccaggacaatttgatagtgcgcaagtcgagcagtcgaatcaagagttccagaaaaat
caagctccagatgtggtcagaacagtgaatgacatggacgaaaaagtagagacggtcagc
aatatcgacactcatataaaaatcgatgcgccgcccattaaaaaggataatttggatgat
agcatcagtgtcaaggaattgttggaagcaacttctaatgagaagaacacggtttcgcac
agttcaacgacattggccagcgtcgagactgaattaggtaacattgaatccgctattccc
gaaaatactattgtcgagaaagctgcagcctaa
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