Pogonomyrmex barbatus (red harvester ant): 105428844
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Entry
105428844 CDS
T04903
Name
(RefSeq) exosome complex exonuclease RRP42
KO
K12589
exosome complex component RRP42
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105428844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105428844
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105428844
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
105428844
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
105428844
NCBI-ProteinID:
XP_011639694
UniProt:
A0A6I9WFA5
LinkDB
All DBs
Position
Unknown
AA seq
292 aa
AA seq
DB search
MAETPLSLGEKTFILHGVDLDLRNDGRSRCQYRSIEIETRLMQHTHGSARLRIGNITDVL
VSVKVEIDTPYAERPNEGKLDFFVDCSANATPAFEGKGGDDLATEISNVLSMAYQTSDVF
DLRQLCILPHKKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPKVIAATLDGSEPD
IQVSDDLYNCIKLDVTNYPLLVTICKIGDNFVIDPTSEEESCSIASILMSVMPNGKVTSV
VKLGYGSLLPSTLIKMMQVGKDIGLKLNEALMKGLEEENKLGRMKPIYGFLR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaacccccttgagtttaggcgaaaagacgtttattctccacggagttgacctt
gatttgagaaatgatggtagatccagatgccagtaccgttccattgaaatcgaaactaga
ttgatgcagcatacacatggatctgcaagattacgcataggcaatatcacggatgtgtta
gtcagcgtgaaagtagagattgacacaccatacgccgagagaccaaatgagggcaaacta
gatttttttgtagattgctctgctaatgctacacctgcatttgaaggcaaaggtggagac
gacttggcgaccgagataagcaatgttctttccatggcctatcagacatcggatgtcttc
gatttgagacagctgtgtatcctgccgcataaaaaatgttggaaaatgtatgtggatatt
ttgattctccaatgtggtggaaatctgttcgatgctgtgggtgctgcagtgaaggcagct
ttgtataatactgaaattccaaaggtgattgcagcaactctcgatggtagcgaaccggat
attcaagtgtcggacgatctttacaattgtattaaattggatgtcacaaattatccattg
ctagtaacaatatgcaagattggagacaacttcgtgatagatccaacgtcggaagaagaa
tcctgcagtattgctagtatccttatgtccgttatgccgaacggcaaagtgacatctgta
gttaaactgggatatggcagcttgttgcctagcaccttgattaaaatgatgcaggtcggc
aaggatatcggactcaagctaaacgaagctcttatgaaaggattagaagaggaaaataaa
ctcggtcgtatgaaacccatatatggctttcttagataa
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