Pogonomyrmex barbatus (red harvester ant): 105428907
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Entry
105428907 CDS
T04903
Name
(RefSeq) histone deacetylase Rpd3-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03082
ATP-dependent chromatin remodeling
pbar03083
Polycomb repressive complex
pbar04213
Longevity regulating pathway - multiple species
pbar04330
Notch signaling pathway
pbar04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105428907
03083 Polycomb repressive complex
105428907
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
105428907
04350 TGF-beta signaling pathway
105428907
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
105428907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pbar03036
]
105428907
Enzymes [BR:
pbar01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
105428907
Chromosome and associated proteins [BR:
pbar03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
105428907
HDAC complexes
Sin3A-HDAC complex
105428907
BRAF-HDAC complex
105428907
REST complex
105428907
SHIP complex
105428907
MiDAC complex
105428907
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
105428907
Heterochromatin formation proteins
Other heterochromatin formation proteins
105428907
Chromatin remodeling factors
NuRD complex
105428907
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
105428907
NCBI-ProteinID:
XP_011639811
UniProt:
A0A6I9WFL5
LinkDB
All DBs
Position
Unknown
AA seq
495 aa
AA seq
DB search
MAMQPLKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATA
EEMTKFHSDDYIRFLRSIRPDNMAEYNKQMHRFNVGEDCPVFDGLYEFCQLSAGGSVAAA
VKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGD
GVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDESYDSIF
VPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKKYNLPFLMVGGG
GYTIRNVSRCWTYETSVALSCEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYLEK
IKTRLFENLRMLPHAPGVQVQAIPEDGAIIEDSEIEEKLNLDERLSQRDLDKRIQHENEY
SDSEEEGEGGRRDNRSYKGSRKRLRLEKNQEMDIRIMNINMKKEDDIKSELKENEKDEKA
NFMNEEIKKDSGANL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggccatgcagccgctcaagaaacgggtctgctactactatgacagtgatatcggaaat
tattattatggccaaggacaccctatgaaaccacatcgtataagaatgacgcacaatcta
ctcttgaactatggcctttataggaagatggagatatatcgccctcataaagctacagca
gaagaaatgacaaaatttcatagcgatgactatatcagatttctgagatcaatacgacca
gataacatggcagaatacaataaacaaatgcatcgatttaacgtaggagaagattgccct
gtttttgatggcttatatgaattttgtcaattatcggctggtggatctgtagctgctgct
gtaaaacttaacaagcaagcttcagaaatctgcatcaattggggcggtggtttacaccat
gcaaaaaagagtgaagcttctggtttttgctatgtgaatgacattgtacttggtattttg
gaattattaaaatatcatcagagagttttgtatattgacattgatgtacatcatggtgat
ggtgtagaggaagctttttatacaacagatagagtaatgacggtctcatttcataaatac
ggagaatattttcctggaacaggagatcttcgtgatatcggagcaggaaagggaaaatat
tatgcagttaatatacctttaagagatggtatggatgatgagagctatgattcaatcttt
gtccctattatctcaaaagtaatggaaacatttcagccttctgctgttgttttacagtgt
ggtgctgactcattgacaggtgatcgattaggatgttttaatctaactgtgagaggtcat
ggtaaatgtgttgaatttgtgaaaaagtataatttgccatttttgatggtcggaggtggt
ggttatactatcagaaatgtatctagatgttggacgtatgaaacatcggtagctcttagc
tgtgaaattgctaatgaattaccatacaatgattattttgaatattttggcccggatttt
aagttacatattagtccttcaaatatgacgaatcaaaatactcccgaatacttggagaaa
ataaagacaagactgtttgaaaatttgagaatgttacctcatgcacctggcgtacaagtt
caggcaataccagaggatggtgctattattgaagattcagaaattgaagaaaaattgaat
cttgatgaaagactgtctcaacgtgatttagacaaaaggatacaacatgaaaacgaatat
agcgacagtgaagaagaaggtgaaggtggacgaagagataatagatcatacaagggatct
agaaagcgattacgtttagaaaaaaatcaagaaatggacattcgtattatgaatattaat
atgaagaaagaagatgatataaaatcagaattgaaggaaaatgaaaaagacgagaaagca
aattttatgaatgaagaaataaagaaagacagtggagctaatctctga
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integrated database retrieval system
