Pogonomyrmex barbatus (red harvester ant): 105430182
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Entry
105430182 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105430182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbar03041
]
105430182
Enzymes [BR:
pbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105430182
Spliceosome [BR:
pbar03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105430182
Complex B
105430182
Complex C
U2 SnRNP specific factors
105430182
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MscL
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105430182
NCBI-ProteinID:
XP_011641886
UniProt:
A0A6I9WGW0
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MSYHRGSGSKPKGFGFTGFQVSGVKRSGTNIPPPPPNSTLSKQGYHTMNAITESALSASW
GMPXKRSKTEEEYFEDDDEPPTSSLEYIPAPGSPTYDLMKKSTTKDESDSEEDPLDAFMA
CIDEEVKRNNCAAQRGDNGKEDKSKGFRADIDGEDDEESYYRYMEENPTAGLQQEESDQE
IEYDEDGNPIAPPKKKDIDPLPPIDHSEIKYEPFEKNFYNVHEEIASLNKQQIDDLKKTL
GIKVSGPSPPNPITSFAHFGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKT
GSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCC
CYGGGSKWEQSKALESGAEIVVATPGRIIDLVKMKATNLTRVTFLVLDEADRMFDMGFEP
QVRSICNHVRPDRQTLLFSATFKKKVEKLARDVLTDPIRIVQGDVGEANTDVTQHVIMFH
NNPSGKWNWLLQNLVEFLSTGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQVERN
KVITAFKKKDVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTA
YTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSSWFRKSRFKGGKGKSLNVGGAGL
GFRGRPDSSNSSGSSSQASKDISEVVKKLERHGPGSDRLSAIKAAFRSQYNSQFRASSDH
TWEQTITPPSVIMPPPPTVPPPKPAAQENQVFSPAVPERKRVRKSRWE
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcatcgaggaagcggtagcaagccgaagggcttcggctttaccggctttcaa
gtatctggagttaaaaggagcggtaccaacatacctccacctccaccaaattctacccta
agtaagcaaggctatcacacaatgaatgccattacggaaagcgctttgtctgcttcttgg
ggcatgcctnaaaaacggagcaagactgaagaagaatactttgaggatgatgatgaacct
ccaacttcatcattggaatatatacccgcacctggttctcctacatatgacttaatgaag
aaatcaacaacaaaagatgaaagtgacagtgaggaggatcctctagatgcttttatggca
tgtatcgatgaggaggtgaaacgaaataattgtgcggctcaacgcggtgataatggtaag
gaagacaagtccaagggatttcgggcagacattgatggagaagacgatgaagaaagttat
tataggtatatggaagaaaatccaactgctggtttacaacaagaagaatctgatcaggag
atcgaatacgatgaagatggtaatcctattgcaccaccgaagaagaaggacatcgatccc
ctacctccaatcgatcatagcgagataaaatatgaaccgtttgaaaaaaacttttacaat
gtgcatgaggagattgcgagtttaaataaacagcagatcgatgacttgaaaaaaactctg
ggtataaaagtatctgggccatctccgccaaatccgatcacaagttttgcccattttggc
tttgacgatgcattaattaaagctatccgcaaaaatgagtatacacaacctacgcctatt
caggcgcaggcagtacctgccgctttaagtggacgagatataatcggtatagcgaagact
ggtagcggtaaaacagcagcttttatctggccgatgttagtgcacattatggatcagcgc
gaattaaaagccggagatggtccaattggtctcattttagcaccaacgagagaattatca
caacagatttatcaagaagcaaagaaatttggaaaggtttataatatccaagtgtgttgc
tgctatggaggtggtagcaaatgggaacaaagcaaagcattggaaagtggtgcggagatt
gtagtcgctacccccggtagaataatcgatctagttaaaatgaaagcaacgaatttaact
agagttacttttctcgttctggacgaagctgatagaatgtttgacatgggatttgaaccg
caagtacgatctatatgtaatcatgtgagacctgacagacaaacattgctttttagtgcg
acattcaaaaagaaagtagaaaagctcgctagagatgttttaacagatcctattaggata
gtgcaaggagatgtcggtgaggctaacaccgatgtgacgcaacacgttatcatgtttcat
aacaaccctagtggtaaatggaattggctgttacaaaatttggttgaatttctaagcact
ggcagtcttttaatttttgtcactaagaagctgaacgcggaagaacttgccaacaatctc
aaactgaaagagtttgatgtattacttttgcatggtgatatggatcaagttgagagaaat
aaagtaatcacggcttttaagaagaaggatgtcagtactctggttgctactgatgtggct
gcgcgaggtttggacattccacatatcaagactgtcgtgaattatgacgtagcacgagat
attgatacgcatacgcatagaataggaagaacgggacgtgccggtgagaaaggtacggcg
tatactcttgtaacggaaaaggataaggaatttgctggacatttagtgagaaatttggag
ggagcaaatcaggaagtgccaaaaagcttaatggatttggctatgcaaagttcatggttc
aggaaatcaagattcaaaggtggaaaaggaaagagtttaaatgtcggtggagcaggactt
ggtttcagaggcaggcccgattcatcaaattcgagtggctcatcgtcgcaagcgtcgaag
gatatcagcgaggtggttaagaagttagaacgacacggacctggcagcgacagactctcc
gctataaaagctgctttccgaagtcaatataattctcaattccgagcatcatcggatcat
acctgggaacagacgatcactccaccttccgtaataatgccgccaccgccaactgttcca
ccaccgaaacccgcagctcaggaaaaccaagttttcagtcccgcggtaccagaacgtaaa
agagtacgaaaaagtcggtgggagtga
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