Pogonomyrmex barbatus (red harvester ant): 105431005
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Entry
105431005 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105431005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105431005
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105431005
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
CSTF1_dimer
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
Ge1_WD40
WD40_RFWD3
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_HPS5
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_VPS8
Beta-prop_WDR75_2nd
Cytochrom_D1
Beta-prop_SPT8
PROPPIN
Beta-prop_NWD2_C
Beta-prop_WDR19_2nd
Beta-prop_WDR11_1st
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
105431005
NCBI-ProteinID:
XP_011643192
UniProt:
A0A6I9WTV3
LinkDB
All DBs
Position
Unknown
AA seq
494 aa
AA seq
DB search
MLQHEHNVIKWSVTTTRHNLQKGPKSSIDGRFVVLSTIPIKVGNIQSPSKNTANQSTMKE
PEADPKNIIKSRELLYRLMISQLFYDGHQTLAVQLSNMIQAEPPCPPSDRLLHLMLIGTA
HEPDRSKKDNSSNLSTFASSFDNTLGPGLDLEFETETQTQAPEPAQYETAYVTSHKGNCR
AGAFSADGQLIATGSVDASIKILDVDRMLAKSAPEEIAPGDQTGGHPVIRTLYDHLEEVT
CLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIVGTN
HPVVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDAKTYASAGKDGSIKLWDGVSNRCI
NTFAKAHDGYEVCSVIFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKA
QAIFNHTEDYVMFPDEATTSLCAWNSXNASRKQLLSLGHNGPVRMIVHSPTAPAFLTCSD
DFRARFWFRRMPTH
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaacatgagcataacgtgatcaagtggtcggtgacaacaacgcgacataaccta
caaaaagggccaaaatcatcgattgatgggcggtttgtggtgctttcgacgattccaata
aaagtcggcaacattcagtcaccttcgaaaaacacggcgaatcagagcacgatgaaggag
cctgaagcggatccgaaaaatatcataaaaagtagagagttgctctacagattgatgatc
agtcagctgttctatgatggtcaccagacgctagctgtacaattgtccaatatgatacag
gcagaaccgccgtgtccaccttcggatcgactgcttcatctaatgttgattggtactgct
cacgaaccagatcgttccaaaaaggataacagcagtaatctgtctacatttgcatcaagc
tttgacaatactttaggacctggattagacttggaattcgaaacagagactcagactcaa
gctccagaaccagcgcagtatgaaacagcatatgttacatctcataaaggaaattgcaga
gctggagctttttcggcggatggtcagttgatagctaccggctctgtggacgcctcgatc
aagatcctagatgtagacagaatgcttgctaagtctgcgccagaggagattgcacctggt
gatcaaactggaggtcatccagttataagaactctatacgatcacttggaggaagtaaca
tgtctggaatttcaccctagagaacccatacttgtgtctggtagtcgtgatttctctgta
aaattattcgattttagtaaagccagcgttaagaaagcatttagaactattacggatgca
gaccagattcgatgtctatccttccatccaactggagattttctcatagttgggaccaat
catccggtagttagactgtacgacgtgaataccgcacaatgctttgtgtgcagcatacca
agtcaccaacacacagctgggataacaagtatcaaatattcaccagatgcaaagacatat
gcatcggcaggaaaagatggtagtataaaactgtgggatggcgtgtcaaatcgatgtata
aatacttttgcaaaggcgcacgacggttatgaagtatgttcggtgatcttcacaaggaat
ggcaagtatttactatcctcaggaaaagattccttgataaagttatgggaattgtctact
agcagatgtctaatagcatatacaggtgccggaactacaggtaaacaggaacacaaggca
caagctatctttaatcatactgaggactatgtaatgtttccggacgaagccactacttcc
ttgtgtgcatggaattcancgaatgcttcgagaaaacaattattgtctttgggtcacaat
ggtcctgtgagaatgattgtgcattcgccaacagcacctgcgtttttaacatgcagtgac
gatttcagagcaagattctggttccgacgaatgccaacgcattaa
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integrated database retrieval system
