Pogonomyrmex barbatus (red harvester ant): 105431572
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Entry
105431572 CDS
T04903
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105431572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbar03400
]
105431572
DNA repair and recombination proteins [BR:
pbar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105431572
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
ARM_CUL7_CUL9
PilJ
Piezo_cap
Motif
Other DBs
NCBI-GeneID:
105431572
NCBI-ProteinID:
XP_011644133
UniProt:
A0A6I9XFS0
LinkDB
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Position
Unknown
AA seq
1125 aa
AA seq
DB search
MPKVNTILNYFTSPKTVKKPETPKEEKEKSVTPKRKQKNKEIVKNGKENKNTDDRKRLYK
DDVEEKEEEEPVKIKRRRLIIPDEESGEDSGDEFKPGSESEDSESVSEGDTEHEPSTGTE
EETPEKKRKKTVSRSKSRQVKHSHDTKTNKKDTKQLTQVQNQAVSNGFAVTPTWPHLKLD
FLQPDKIKDIYRRTPKDPDYDSRTVYVPIEFLNNQTPAMRQWWELKSKHFDCVLFFKVGK
FYELYHMDAVIGVNELSLTYMRGEFAHSGFPEIGYGRYSASLIERGYKVARVEQTENPEM
MSARCNKMIKATKFDKVVKREICQVSTKGTRVYTPLDVEASTPNSNYLLSLVEKNDLSSS
ISSYGVCFVDTTIGEFYLGQFIDDRCNSRLLTLLAHHPPVHIIHERGNLSQKTLQLINNT
LPVALKESLQRETQFWSATTVLKKLHEGGYFKTEKDSNFAWPEGLKSYLNEGDSLGLTPA
DNKELAIHALGGCVYLLKEFLLEQQLLAQGCFNTYIPPDFSAASNRAGLNYANTMVIDAV
TIKNLRIFGEGSLTNALDRCCTAFGKRLLREWICRPSCRKTVIIERQEAIQELVDRMDVM
QSARAILSTLPDLERLLSKIHAQGNAARMKNHPDGRAIMFEGPTYSKRVIVDFTTTLAKF
EEVLKFVELFDDFKSNLITRCVRYEPEGDFPHLRETLDYFKTAFDHEDAKKQGCIVPKKG
VDAEYDSVLTELAENKKNLDKYLEKQKQHFGVKITFFGTDRKRYQIEIPDSQIKKVGPGY
ELQSQRKGFKRYYTAEAKELLARQMSAEEHRDKVLKDLNRRIFAQFSEKYDMWHAAVHKL
ATMDVLISLADYARNSDMCMPEIHDGSDGEIFIKIQDGKHPCITSDNFIPNDTLLATDGT
ASFMILTGPNMGGKSTLMRQVGLITIMAQIGSYVPASSCCITLVDRIFTRLGANDDILAG
QSTFLVELSETAAILQHATPYSLVLLDELGRGTSTYDGTAIAAAVVDALTKLKCRTLFST
HYHSLVEDYKTNKEVTLAHMACMVETEEEEEVSQETVTFLYKLSEGACPKSYGFNAARLA
GVPSIITKKAHEIAKRMEQETNHKHIFNALCKANGAGMRSLIATI
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagtgaacacgatacttaattatttcacgtccccaaaaactgtcaagaagccg
gagacaccgaaggaggagaaagagaaatcggtgactcctaagaggaaacaaaagaacaaa
gaaattgtcaaaaatggaaaagaaaataaaaacacagatgataggaagagattatataaa
gatgatgttgaagaaaaagaagaagaagaacctgttaagattaaaagacgacgcctgatt
attcctgatgaagaatctggggaagattccggagatgaattcaagccaggttctgaatct
gaggattctgagtcagtttctgaaggggacacagaacacgaaccttcgacaggaacagag
gaggaaacaccagagaaaaaaaggaaaaaaaccgtgtctagatccaagtcaagacaagta
aaacattctcatgatacgaaaacaaataaaaaagatactaaacaacttacgcaagttcaa
aatcaagctgtaagtaatggatttgctgtcacgcccacttggcctcacttgaaattggac
tttctacagccagataagataaaggacatatacaggagaacaccgaaggatccagattat
gattccaggacagtctatgtacccatcgaattcttaaataatcaaactcctgcgatgaga
caatggtgggaattaaaaagcaagcattttgactgtgtgctttttttcaaagtcggtaaa
ttctatgaattgtatcacatggacgcagttatcggtgtcaatgaactcagcctcacgtac
atgcgaggtgaattcgcgcattctggatttcctgaaatcggatatggtcgttactcggca
agtcttatagagaggggatacaaagtcgcacgagtggagcaaacggagaatccggaaatg
atgtcagcgcgttgtaataaaatgattaaagcgacaaagtttgataaagtcgtaaagcgt
gaaatttgtcaagtcagtaccaaaggcacaagagtatatactccgttggacgtggaggcg
tctacaccaaactccaattatttgttatctctggttgaaaaaaatgatcttagttcatcg
atcagctcctatggcgtatgttttgtagatacaacgataggtgaattttatcttggtcaa
ttcatcgatgatcgctgcaattcgagactgttaactctactggctcaccatccaccggtt
cacataatacacgagcgcggtaatctatcgcaaaaaactttgcaacttataaataatact
ttaccagtagcgttaaaagaatcactacagcgcgagacacaattctggtctgctacaact
gtattaaaaaaacttcacgaaggaggttacttcaaaacagaaaaagattccaattttgca
tggcctgaaggtttgaaatcgtatcttaacgaaggagacagcttgggtttaacgccagcc
gataataaggaattagcgatacacgcgctcggaggatgtgtatatttgctgaaggagttt
ctactcgaacagcaattattagcgcaaggttgctttaatacctatattccgccggatttt
tcagccgcgagcaatcgcgcaggtcttaattacgcaaacaccatggtaatagatgccgtt
acgataaaaaatctaaggatcttcggtgagggttcgctcaccaatgcattagatcgttgt
tgtaccgcattcggcaaaagattactacgtgaatggatctgcaggccgtcttgccgcaaa
actgttattatagaacgccaggaagctatacaagaattagtggatcgtatggatgtaatg
caatcagctcgcgcaattttgtcaactttaccggatctcgaaaggttgctgagcaaaata
catgctcagggaaatgcagcaagaatgaaaaatcatcctgatggtagagccataatgttc
gaaggcccgacatattcgaagagagtaatcgtggatttcactacgacactcgccaaattc
gaagaggtgttaaaatttgtcgagttgtttgatgatttcaaaagtaacttgataacacgt
tgtgtccgatatgaaccggaaggcgattttcctcatttaagagaaacattggattacttt
aagaccgcgtttgatcacgaagatgccaagaagcaaggttgcattgttccgaaaaagggg
gttgatgctgaatatgattcggttttaaccgaactcgcagagaacaagaaaaatctagac
aaataccttgaaaaacaaaagcagcattttggtgtaaaaataactttcttcggaacggat
aggaaacgttatcagattgagattcccgattcgcaaatcaagaaagtcggtcccggatac
gaactacaatcacaaagaaaaggcttcaaacgctattatactgccgaggcaaaggaactt
ttggcgaggcaaatgagtgcagaagagcacagagataaagtgttaaaggatcttaatagg
cgaatatttgcgcagttcagcgaaaagtacgacatgtggcatgcggccgttcacaaattg
gccacgatggacgttcttatttctctcgcggattacgcacgaaatagcgatatgtgtatg
ccagagatacatgacgggtcggacggtgagatattcatcaaaatacaagacggaaagcac
ccttgcatcacatctgacaactttataccgaatgacactctgttggcaactgatggcacc
gcctctttcatgattctgacgggaccaaacatgggaggcaaatcaactctaatgcgtcaa
gtgggcctgatcacgatcatggcgcagataggcagctatgttccagccagctcgtgttgc
ataacgctagtagaccgtattttcacgcgactgggtgcaaatgacgatattctggctggt
cagagcacgttcctggtcgaactaagtgaaaccgccgcaatactgcaacacgctacgccc
tattcgcttgttctgcttgatgaattaggacgtggcacatcaacttacgatggtacagca
atagcggctgcggttgtcgatgcactgaccaagctcaagtgtcgtacattgttctcgacg
cattatcattctttggtcgaagattacaaaaccaataaagaagttacgttagcccatatg
gcatgtatggtagagacagaagaggaagaggaagtttcgcaagagactgtaacatttttg
tataagctcagtgaaggagcttgcccgaaatcttacggattcaatgccgctcgattagca
ggcgtaccatctataatcacaaagaaagcgcatgaaatagctaagagaatggagcaagaa
actaatcacaaacacatattcaatgctctttgcaaagctaatggtgctggaatgagaagt
cttattgctaccatttaa
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integrated database retrieval system
