Pogonomyrmex barbatus (red harvester ant): 105431601
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Entry
105431601 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase Ddx1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbar03041
]
105431601
03016 Transfer RNA biogenesis [BR:
pbar03016
]
105431601
Enzymes [BR:
pbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105431601
Spliceosome [BR:
pbar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105431601
Transfer RNA biogenesis [BR:
pbar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105431601
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105431601
NCBI-ProteinID:
XP_011644178
UniProt:
A0A6I9WMJ3
LinkDB
All DBs
Position
Unknown
AA seq
729 aa
AA seq
DB search
MTAFEEMGVLPEIAKAVDDMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDLESGKGAGTVVVQQPTHWGLSLFDRGRAMAVTLDGLRCQSREQKEWHGCR
ANKGVSGSGKYFFEATVTDEGLCRVGWSMSQASLDLGTDKFGYGFGGTGKKSNAKQFDNY
GEAFGMHDVIGCFLDLVKGEIKFTKNGVDLGVAFTLNAQQKSQTYYPAVVLKNAEMAFNF
GAQPFKYPPPNDYTAVSSAPKESVKNNAVNSNQSSSNESGKPRNNAPQAIIIEPSRELAE
QTYNQIQKFKTHLKDPTIRELLVIGGVNVKEQITILNSGVDIVVGTPGRLEDLIQGGYLS
LTHCRFFVLDEADGLLKQGYTELIDRLHKQIPKITSDGKRLQMIVCSATLHAFEVKKMAE
RLMHFPTWVDLKGEDAVPETVHHIVVMVDPQKDKTWRNLRNCIQTDGVHARDDMNRMNDI
ACSLSEAVKILKGEYCIRAIKEHKMDRALIFCRTKLDCDNLERYLKRSGGQQFSCVCLHG
DRKPAERKANLEKFKRQEVKFLICTDVAARGLDITGLPFMINVTLPDEKSNYVHRIGRVG
RAERMGLAISLVSSVPEKVWYHGEWCPSRGRNCSNTNLTDQGGCCTWYNEPQYLADIEDH
LNVTIQQVGPDIKVPMNEFDGKVTYGEKRVAMGSDYKNHVQQMAPVVAELAALESRAQIA
FLKTHIAER
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgacggcttttgaagaaatgggtgtcttgccggaaatagcaaaggcagttgacgatatg
gattggacactaccaacggatgtccaagctgaagctataccattaattctgggtggtggc
gatgtcctcatggctgcagaaactggtagcggaaaaactggtgctttttgtttgcctatt
ttacaaatagtttgggagactcttaaagatttggaatccggaaaaggggctggaaccgtt
gtagtacaacaaccaacacattggggattgagcctgtttgatagaggacgagctatggca
gtaaccctagatggtttaagatgtcaaagcagagagcaaaaagaatggcatggttgccgt
gcaaataaaggtgtgtcgggcagtggcaagtatttttttgaagcaacagttaccgatgaa
ggtttatgtcgagtaggctggtccatgtctcaggctagcttagatttaggaacggataaa
tttggttatggatttggtggtactgggaaaaaatcaaatgccaagcaatttgataactat
ggagaggcgtttggaatgcacgatgtgattggatgttttctcgacttggtgaaaggcgag
ataaaatttaccaagaacggtgtagatttaggcgtcgcgtttacattaaacgcgcaacaa
aaatcgcagacttactatccagctgttgtgttaaagaacgccgagatggcattcaatttt
ggagcgcaaccgtttaaatatccacctccaaatgactatacagctgtatcatcagctccg
aaagaatctgtcaagaataatgcggttaatagcaatcaaagttcatccaacgaaagtggc
aaaccgaggaataacgctcctcaagcaatcattatagaaccttctcgcgaattagctgaa
caaacttacaatcaaattcagaagtttaaaacacatttaaaggatccgacaattagagaa
ctgcttgttatcggtggggtaaatgtaaaagaacagattaccattttgaattctggcgta
gatatagtagttgggactcctggacgactagaagatctcatacaaggcggttatttatca
ttaacacactgcaggttctttgtacttgatgaagctgatggattgttaaaacaaggttac
accgaacttatcgatcgtttgcacaaacaaatcccgaaaattacgtcggatgggaagaga
ttgcagatgatcgtgtgttcggcgacactacacgcatttgaagttaaaaagatggccgaa
cgtttgatgcattttccaacttgggtagatttaaagggtgaagatgcggtgcccgagacc
gtacatcatattgtagtgatggtagatccgcaaaaggacaaaacatggcgtaacttgagg
aactgcatacaaactgacggcgtacacgcgagagacgacatgaatagaatgaatgatatt
gcttgttcgttgtcagaggctgtgaagatactaaagggagagtactgcattcgcgctatc
aaggaacacaaaatggatcgggcattgatattctgcagaacaaaactcgattgcgataat
ctcgagagatatttaaagagatctggtggacaacagttctcatgtgtgtgtctacatgga
gataggaaacctgcagaacgtaaagctaatttagagaagttcaaacgccaagaggtaaaa
tttttgatctgcactgatgtggctgccagaggattggacatcactggtctgccttttatg
ataaatgtaaccctgcccgacgaaaaatccaattatgtacatcgtattggaagagttggc
agagctgaaagaatgggtctagccatttctttggtcagtagcgtaccggaaaaggtctgg
tatcacggcgagtggtgtccttctcgcggaagaaactgcagcaatacaaatctgaccgat
caaggtggctgttgcacatggtataatgaacctcaatatttggcggacattgaagatcat
ttaaatgtgacgattcaacaagttggcccagacataaaagtgccaatgaacgagttcgat
gggaaagttacatatggcgaaaagagagtggcaatgggttcggattataaaaatcatgtc
caacaaatggctcccgttgtggccgaattagctgcactagaatccagagcacagattgcg
tttttaaagacgcatatagcggaacgttaa
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