Pogonomyrmex barbatus (red harvester ant): 105432022
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Entry
105432022 CDS
T04903
Name
(RefSeq) transcription factor SOX-5
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pbar03000
]
105432022
Transcription factors [BR:
pbar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
105432022
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
105432022
NCBI-ProteinID:
XP_011644905
UniProt:
A0A6I9WP66
LinkDB
All DBs
Position
Unknown
AA seq
861 aa
AA seq
DB search
MSTLGRLRMSSKRKSPPTKLSEGGGGAGTVAGANEEEEDTTSPVAGSGGEAAVVVGEEGA
ATPVDIEECYSHQRGGECESSGCSSPATTSEPDLRDSPSPSLNSLRTAKRQRLLFLSSQE
TLAPYHHPHHHHHHHHHHHHHHTNTSSSSGGALEPASSSECGSPPTLLSVDPYYPHHPHH
NNNNNTVTQNNNNNNNNNNNGSGTTAAGSKRSMDDVLKRLTCKMNSESLSIQDDTTNTRR
TSPPLSSTPTGHNAHSCSGSTTTTVANNVTLSPPDAGRISNTEAQVQQDGVAALHRVLCA
ESFAEKERRLSEMILQLQLIREQLLQQQDQSKSYPTHMTVDSQKQIEMQRLQTEHLKRQQ
EHIMQHNIQELQAQMTKSQLSMSGPQSLMFLPFLEQLRGLPVQSPMPPPPTTSTATTGNK
HINSIANMISSHREGPSWATAHLAQMTTQMEKESSSPAPISSAVAPTAPPLQDLDAPLNL
TKPKSTSSGATASSSSPGSDSHSTGAGSSGQQEQPLAATAPKLFPPGLPLPRNYLPTLPY
AGLPPHLSTLSSPMGKVMAKDEAGGPGGSVAAAAVAAVEKHFAMHGLYGLPSNAGGMPPS
AQTQRPIKHSGSREETPQEEQDFLSTPHMWRDPGYKVAEDITEKAKMVRQQKREGENKPH
IKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKSMSNSEKQPYYEEQSRLSKL
HMEKHPDYRYRPRPKRTCIVDGKKMRISEYKSLMRQRRQEMRQLWCRDGGSEMNFLSPVS
ADLTGSQHHPGTGAGPSARPSVSPPATMLNGGGGGAGPSSDHPSFYYPQDSLSPTDMMNF
SPENSGSIGGYDASPRHHDED
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgcttggcagactgaggatgtcctcaaagaggaagtcgccaccaacgaagcta
tcggagggcgggggcggtgcgggtacagtggcaggcgccaacgaggaggaggaggacact
acctcgccggtggccggttccggtggcgaggcagccgtcgtcgtcggtgaggagggtgcc
gccacccccgtcgacatcgaggagtgctactcccatcaaagaggcggcgagtgcgagtca
tccggctgttcatcgccggcgactaccagcgagccggatctacgcgactcgccatcgccc
tcgttgaattccttacggacggccaagcggcagaggctgctgttcctgtcgagccaagaa
accctcgcgccgtaccaccatccccatcatcatcatcaccaccaccatcatcatcatcat
caccacacgaacacgtcgtcatcgtcgggcggtgcattggaacccgcgagctcctcggag
tgcggctcgccacccacccttctctccgtcgatccttactatcctcatcatccccatcac
aataataacaacaacaccgtcacgcagaacaataacaacaacaacaataacaacaataac
ggcagtggcactactgctgcgggcagtaaaagatccatggacgacgttctcaaaaggcta
acgtgcaagatgaacagcgaatccctgtctatccaagatgatactaccaacaccaggcgg
acgtcaccgccactttcttccacgccaaccggtcacaatgcgcatagttgcagtggaagc
acgaccaccaccgtggcaaataacgtgacactctcgcctccggatgccggtaggatatca
aatacggaggcgcaggtacagcaggacggcgtggcggcccttcatagggtcctctgcgcc
gagagcttcgccgaaaaggaacgtcgactgtcggagatgatactgcagctgcaattgata
agggagcaattgctgcaacagcaggatcagtcgaagtcatatcccactcacatgacggtc
gactcgcagaagcaaatcgagatgcagcggctgcaaacggagcacttgaagcggcagcaa
gagcacatcatgcagcacaacatccaggagttgcaagctcagatgacaaagagccagctg
agcatgtcggggccacagtcgttgatgtttctgccgtttctcgagcagctcagagggctt
cccgtgcagtcgcccatgcctccgccgccgaccacgtcaactgccaccaccggcaacaag
cacatcaactctattgctaatatgatcagcagtcatcgggaaggcccgagctgggcgacc
gcgcatctcgcgcaaatgaccacgcagatggagaaggaatcgtcgtcgccggcgccgatc
tcatccgcggtagcgccgacggcaccgcctcttcaggatctcgacgctccgctgaacctt
accaagccgaagtcgacgtcgtcgggcgccacggcgtcctcttcgtcgcccggtagcgac
tcgcactcgaccggcgccggaagtagtggccagcaggaacaaccgttggcggcaaccgcg
cccaaacttttcccgccaggactgccgttaccgcgaaattacctgccgacgcttccctac
gccggtctgccgccgcatctcagcactttgtcttcgccgatgggcaaggtaatggccaaa
gacgaggccggtggaccgggaggatccgtggcggccgctgcggtcgcggccgtggaaaag
cacttcgcgatgcacggcctgtacggattgccatcgaacgcaggtgggatgccaccgtcg
gcccagactcaaagaccgatcaagcattctggctctcgggaggagacgcctcaggaggag
caggattttctctcgacgcctcacatgtggcgagatccgggatataaagtagcggaagac
ataacggaaaaagctaaaatggtgaggcagcagaaaagggagggtgagaacaagccacat
atcaagcgacctatgaacgcgttcatggtgtgggccaaggacgaacgtagaaagatcttg
aaagcctgtccagacatgcataattcgaacatatcgaaaattctcggtgcccggtggaag
tcaatgtcgaactcggagaagcagccgtattacgaggaacagtcgcggctgtcgaagctg
cacatggagaagcatccggactataggtatcggccgcgacctaagcgcacgtgcatcgtg
gatggcaaaaagatgcgcatctccgagtataagtcgctgatgcggcagcggcggcaggag
atgcggcaattgtggtgccgcgacggcggcagcgagatgaacttcttgtcgccggtgagc
gccgatctgactggctcgcagcatcacccgggcacgggcgccggtccgtcggcgcggccg
tcggtctcgccgccggcgacgatgctgaacggcggtggcggtggcgccggcccgagctcg
gatcatccctcgttctattatccgcaggacagcctctcgcccacggacatgatgaacttc
tcgcccgagaattccggctcgatcggcggctacgacgcgagtccgcgacatcacgacgag
gattga
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