Pogonomyrmex barbatus (red harvester ant): 105432212
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Entry
105432212 CDS
T04903
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar04512
ECM-receptor interaction
pbar04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105432212
04518 Integrin signaling
105432212
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pbar00536
]
105432212
Glycosaminoglycan binding proteins [BR:
pbar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105432212
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Inhibitor_I53
MtxA_C
Motif
Other DBs
NCBI-GeneID:
105432212
NCBI-ProteinID:
XP_011645213
UniProt:
A0A6I9XI09
LinkDB
All DBs
Position
Unknown
AA seq
1499 aa
AA seq
DB search
MRRRTLELITRLLVIQLLLLLPYLVNAKKNRLRKQRSKLEHEVQQPDEYDYDYDYDGYDE
KNETTTTLPPPVAPTSITRLSEWPKKPGESFMRKSKTLTDSPAIATTRFYDHDLGITTST
SKQNYLVSPTSEILSGEGNVYNSVTVQSPWGESGRPGDIGRPGTAGYPGQPGIPGIPGPP
GPPGPAPNISLYYQQLALSQANQDKGPTGSDFPWFPMPSSPGPPGPPGPPGLPGPTGPQG
FHGARGETGEPGPAGPPGMPGPNGPPGLPGKDGAGGEDGEIGPPGLPGPVGPRGLSGMPG
FPGIKGHRGFPGLDGAKGEQGAPGEKGFMGSPGSMGPVGPTGPAGPRGERGREGPPGPPG
TRGLDGVAGPPGQPGGIGKPGLPGFPGNPGIKGDQGPQGLTGSQGLQGPRGENGRPGQPG
ETGPQGPQGKDGIPGEKGATGAIGSIGLPGFPGIQGQPGIPGSPGVSGAKGAPGFPGERG
FKGDAGVKGDAGMPGPRGLPGPPGNEGKRGKRGIRGQDGAVGPPGERGPSGARGLPGQDG
VVGPKGQSGDRGPMGPVGSKGATGDSGLPGSPGLQGARGLMGRPGVPGKPGNSGERGIQG
ADGKPGEQGPPGPQGLPGLLGSSGERGYPGERGKDGEPGNPGPPGPRGDAGKEGPAGAQG
PPGPSGNDGARGPAGPVGPRGFQGLPGADGNPGIPGKDGQAGVQGRPGPPGLVGNRGERG
LPGERGLMGLPGPMGFKGELGAQGADGLTGLPGPKGNRGNTGLPGLPGFPGAKGSIGESG
QKGERGMVGLMGPEGPPGHIGERGSQGEIGPPGPPGEPAERGDPGSPGPIGETGAPGNPG
ERGLPGLQGSQGSPGPQGLIGLPGVKGDRGYPGLKGEQGSPGQPGNRGEIGPPGPIGHTG
AKGIRGEPGTRGEPGLMGPPGNGHVGPPGSPGNIGPSGAPGLPGVKGDPGDTGRPGNPGP
IGIPGPPGIDGFKGESGSPGPQGLTGPQGPQGPPGERGLPGLPGSIGPTGERGLRGIPGE
IGQPGKPGIEGPPGPPGLKGSPGPPGHIGEAGPEGPVGRPGPPGIGGRPGDKGPPGAPGV
IGPTGPPGLPGPPGATGPTGPTGERGPKGETGPQGIEGPQGSSGKPGLAGPEGAKGDRGE
EGPKGAKGHRGFTGLQGLPGSPGLVGEQGLPGLPGSPGKNGEPGIRGSPGREGNPGPIGP
EGHSGPRGPPGEKGRYGLPGLPGPPGPPGPPGEVGFDYDAASLAILLGRGQTKGPDPLGD
EPPRIFNKDITEKERRELLLKAYENLKLSFQKLVKPDGEKNSPAKTCRDLFVAYPEKLSG
KYWIDPNEGDIRDAILVYCDAEKRATCILPNPSRSPEITHITDQQETWLSEIDGGMKITY
KADSNQISFLQLLSKHAIQNITYHCKNSVAYFDYERKTYRKGLKLLSWNDVELTPRGNQR
LKYEMIMDQCRFYQNHWGKTVISYETDKPVRLPILDVALRDIGKSEQSFSVEIGAACYD
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggcggaccctagagctaatcacaagacttctcgtgattcagttactgctgctt
ttgccgtatctagtaaacgccaaaaagaatcggttgaggaaacaacgatccaaactagag
cacgaggttcagcagcctgacgaatatgattatgattatgactatgatggctatgacgaa
aaaaatgaaaccacgacgacattgccaccacctgtggcacccactagtattacacgactt
tcggaatggcccaaaaaaccaggagaaagtttcatgcgtaaatcaaaaacacttacagat
tcaccagctattgcaacaactcgattttatgaccatgatttagggataactacttctact
tctaaacaaaattatttagtttcacctacctctgaaatattatcgggtgagggtaatgta
tataattctgtgacagtacaaagtccatggggtgaatctggtcgacctggagacattggt
cgtcccggtaccgcgggatatcctggacagcctggtattcctgggatcccaggaccacct
ggacctccaggacctgcaccaaatatatccctatattatcaacaattggctttgtctcaa
gcaaatcaagataaaggaccaaccgggagtgatttcccgtggtttccgatgccaagttcg
ccaggtccaccaggtccgccaggtcccccaggtttacccggtcccactggtcctcaaggt
tttcatggcgcacgtggtgaaactggtgaacccggtcctgcaggtccccctggcatgcca
ggtcctaatggtccaccaggattacccggaaaagatggtgccggtggagaagatggcgag
ataggtccaccgggcttgcctggtcctgtgggaccacgtggtctttctggaatgcctggg
tttccaggtataaaaggccatcgtggtttcccaggtctagacggtgctaaaggagaacaa
ggcgctcctggtgagaaaggatttatgggctcgcctggatcaatgggaccagtaggacca
acgggtccagctgggccccgaggtgaaagaggtagagaaggtccgccaggccctcctgga
acaagaggtctcgatggagttgctggaccgcccgggcaacccggtggtataggtaaacct
ggtttacctggtttcccaggtaatcctggaattaagggtgatcaaggaccacaaggactg
acaggaagtcaaggtttgcaaggtccgagaggtgaaaatggccgtccaggacaacctggt
gaaactggtccacaagggcctcaaggcaaagatggaattcctggcgaaaaaggagccact
ggagccataggatccattggtttacctggatttccgggtattcagggtcaaccagggata
ccaggcagtcctggtgtttctggcgctaaaggagcacccggctttcctggtgaaagaggt
tttaaaggtgacgccggtgtcaaaggagatgcaggaatgcctggtccgcgtggacttcca
ggacctcctggaaacgaaggtaaaagaggtaaaagagggatacgcggccaggatggtgct
gtggggcctcctggagaacgtggtccatctggagcgcggggtcttcctggtcaggatggt
gttgtcggacctaaaggacaatctggtgatcgtggtcctatgggacctgttggatcaaaa
ggcgccacaggagattctggattacctggatctccaggattacagggtgcacgtggtcta
atgggtagacctggagtccctgggaaaccaggtaactctggagaacgtggaattcaaggt
gcagatggcaaacctggagagcaggggccacctggaccgcaaggtttaccaggattatta
ggatcatcaggagaaagaggatatcctggagaacgtgggaaggatggtgagcctggcaat
ccaggtccgcccggtccaaggggagatgctggtaaagaaggacctgcaggagcacaaggt
ccaccaggtccatcaggcaatgatggtgcgcgaggtcctgcaggacctgttggacccaga
ggttttcaaggtcttccaggcgccgacggtaatccgggtattccaggcaaagatggacaa
gcaggagtacaaggacgtcctggtccaccgggattagttggtaatagaggcgagcgaggt
cttccgggagaacgaggactcatgggattacctggacctatgggatttaaaggagaactt
ggagcgcaaggagctgatggtctcactggtttaccagggcctaaaggaaatagaggaaat
actggtttaccaggtttgccggggtttcctggtgcgaaaggatcaattggagaatctggg
cagaaaggagaaaggggtatggttggactaatgggccctgaaggtccaccagggcacatt
ggagagcgtggttcacaaggagaaattggacctcctggtcctcctggagaaccagcggaa
cgaggcgatccgggttctccaggtcctattggtgaaactggagctcctggtaatccagga
gaaagaggtcttcctggattgcaaggttcgcagggttctccaggtccacaaggattaatc
ggacttcctggtgtgaaaggcgatagaggatatccgggcttaaaaggagagcaaggaagt
cctggacagcctggtaatcgcggcgaaattggaccgcctggacctatcggacatactggt
gctaaaggaattagaggtgaacctggtacacgtggcgaacctggcttaatggggccacct
ggcaatggacatgttggaccaccaggatcaccaggaaatataggaccatctggtgctcca
ggattgcctggtgttaaaggtgatccaggcgatactggacgtcctggaaatccaggtcca
attggtattcctggccctcctggaatagatggatttaaaggcgaaagtggatccccaggc
cctcaagggttaacgggtcctcaaggacctcaaggtccacccggcgaaagagggttacca
ggtttacctggttctattggtcctacaggagaaagaggattacgtggaattcccggtgaa
atagggcaacctggaaaaccaggaatagaaggcccacccggacctcctggattaaaaggt
tctccaggtcctcctggccatattggagaagcaggaccggaaggaccagttggaaggcca
ggaccaccgggaataggaggccgaccaggtgacaagggaccacctggagcacctggtgtt
atagggccaacaggccctcctggcctaccagggccacctggagccactggacctactgga
cctactggagaacgtggtcccaaaggtgaaacaggaccgcaaggcatagaaggtccgcag
ggatcttccggaaaacctggcctagcaggtcctgaaggcgcaaaaggcgatcgcggagaa
gagggaccgaaaggagctaaaggacatcgaggatttactggtttgcaaggattgcctgga
tctcccggtttagtaggagaacagggtctacctggtttgccaggatctcctggtaaaaat
ggagagccaggtattagaggtagtcctggacgggaaggtaatccaggacctatcggacct
gaaggacattccggaccaagaggtccacctggagaaaaaggtcgttatggattaccaggt
ttaccaggacctcccggaccacctggtcctcctggagaagttggttttgattacgatgct
gcatctctagcaatacttctaggaagaggtcaaactaagggaccagatccacttggtgat
gaaccaccaagaatatttaataaagatattactgaaaaggaacgaagagaattgctttta
aaagcatatgaaaatctaaagttgtcattccaaaaattagtaaaaccagatggtgaaaag
aattctccggcgaaaacctgtcgagatctatttgtcgcctatccggaaaaattatctggc
aaatattggattgatccaaatgaaggagacatccgagatgcaatcttagtatattgtgat
gctgaaaaacgtgcaacttgcattttaccgaacccatcgcgttcgccagaaattactcac
atcactgatcaacaagagacatggctgagtgagatagatggtggcatgaagattacgtac
aaggcggacagtaatcagatcagtttcttgcaattgctctcaaaacatgcaattcaaaac
atcacgtatcattgcaaaaatagtgtggcttactttgattatgagagaaaaacatatagg
aagggcttgaagcttttgtcttggaatgacgttgaattgacaccacgaggcaaccagcgt
cttaaatatgagatgataatggatcaatgcagattttatcaaaaccactggggtaaaact
gttatctcatacgaaacggacaaacccgtaagacttcctatcttagatgtggctttgcga
gatatcggaaaatccgaacagagtttttccgttgaaatcggtgcagcttgttacgactaa
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