Pogonomyrmex barbatus (red harvester ant): 105432746
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Entry
105432746 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105432746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105432746
03041 Spliceosome [BR:
pbar03041
]
105432746
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
105432746
Spliceosome [BR:
pbar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105432746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
ATAD4
Motif
Other DBs
NCBI-GeneID:
105432746
NCBI-ProteinID:
XP_011645992
LinkDB
All DBs
Position
Unknown
AA seq
597 aa
AA seq
DB search
MGKENETDNTKKRRKSLNANSGTSMKDGDMYKMIISYEEKEATERLSEDDSECFLTTCDD
IRAAMTKIAKLKSTGDSNMKDEIRELQIQTSLAFIELKKLNRMEKFRTKSARDSLVTAKS
SVDSRHLHLQNLLYEVMHLKKEVVKCLQFKSKDELIELVSEEEFYKEAPENISRPEITKD
SPHQMRLARLEWELTQRKQLAALCDELTESKKAVASSIETKQTRLDNLAPQLRSILEASK
PLQESLGLPLDKIRQEHQKASLLASPLYVLYAKVSAYRDAYDDTLLVKVEGDEDEAKRAN
SHDGLQESDSDPENQSENIIEETPVHKKRHHRLSREARQEEKRSKLLQRHPLHVKVVITL
KSKFWIITFIVLEEIKYAGLHFVSCDVNEQQQKLTSQELAQNCVESVLREIKRRIKARLD
LCMEIRQLESGNLPIFISTTDPVPQKISTSLHRFSTMTWKSYSSYVASPEFYQRGLVLSV
DIFYEAILRRGSSELVARIAIKPDYPKIAPVFNISVSPVVPASADIIRDIEREVNVMWTK
PPTLTAQIQRLRACFDIYLETESMAPKEKIFFYPVRGRTRARPYKYLSLGGGIFTHR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagaaaacgaaacggacaatacgaaaaaaagaagaaaatctcttaatgcaaac
agtggaacatcgatgaaagacggagacatgtacaagatgataattagttacgaagaaaag
gaagctaccgagagattatctgaggacgattccgaatgctttctgacgacttgtgatgac
attcgagcagcgatgaccaaaatagctaaattgaaatccactggagattcaaacatgaaa
gatgagatacgtgagctgcaaattcaaacatctctggcttttatagaattaaagaagtta
aatcgtatggaaaagtttcgtacaaaatctgcacgtgattctttagtgactgcaaagagt
agtgtagatagcagacatctgcatttacaaaacttgctatacgaagtgatgcatttgaag
aaagaagttgtcaaatgtttacaattcaaatccaaagatgaattgatagaacttgtttca
gaagaagaattttataaagaagctccggaaaatatttcacgacctgaaataacaaaagat
agtcctcatcaaatgagattggctcgtttggaatgggaattgacacaacgaaagcaatta
gcggcattgtgcgacgaattgacagagagtaaaaaggcagtggcatccagtattgaaaca
aaacaaacccgcttggacaatcttgcgccacagctgcgttctatattagaagcaagcaaa
ccattacaagaaagtcttggattgccattagataaaattcgccaggagcatcaaaaggcg
tcattactcgcgtcaccgctctatgtgttgtacgcgaaagtatctgcttacagagatgct
tatgatgatacattgttggtcaaggtggagggcgacgaggacgaagcaaaacgcgcaaat
agtcatgatggtttgcaagaatccgactcggatcctgagaatcaatctgaaaatatcata
gaagaaacacccgtgcataagaaaagacatcacagattatctcgagaagctagacaagag
gagaagcgatccaagttattgcagcggcacccattgcatgtaaaagttgttattacatta
aaaagtaagttttggataataacatttatagttttagaagaaataaaatatgccggtcta
cattttgtctcatgtgacgtaaacgaacaacaacaaaagcttacgagtcaagaattggca
caaaattgtgtagagagtgttctaagagaaattaaacggcgtataaaagcgagactagat
ttatgtatggaaatacgacaattggaatccggcaacttaccaattttcatcagcacgaca
gatcctgtgccgcaaaagatttcgacatcgctgcatcgattttcaactatgacgtggaag
agttactcgagctatgttgcctcaccggaattttaccagagaggattagtattatccgta
gacattttttacgaagctatacttcgtcgcggcagtagcgaacttgtggccaggattgct
atcaaaccggattacccaaagatagcaccggtatttaatataagcgttagtccagtagtg
ccggcgtccgccgatatcattagagatatcgaaagggaagtcaatgtaatgtggaccaag
cccccaactttgacagcgcaaatacaacgattgagagcatgtttcgacatttatctggag
accgagagtatggcaccgaaggaaaaaatatttttctatcctgtaaggggccggactcgc
gctcgaccatataaatatttatcattaggaggaggtatatttactcaccgttga
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