Pogonomyrmex barbatus (red harvester ant): 105433133
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Entry
105433133 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-B
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105433133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbar03032
]
105433133
03400 DNA repair and recombination proteins [BR:
pbar03400
]
105433133
DNA replication proteins [BR:
pbar03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
105433133
DNA repair and recombination proteins [BR:
pbar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
105433133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
TopBP1_BRCT0
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
105433133
NCBI-ProteinID:
XP_011646571
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MTTQESQIECDVNIHFVVPNHHASEDDCSDEMWLAFNKCCEFSMLPEWISEKLCSKMKPS
KNDVFVIEEFKGDLFKMLKNFKCSIVSPKCLLICFMNGEPIPEGTSPIYTTSMRGMCICA
SGFSTEIKDQIQQKVEYMGGFFTKQLRSSVTHLVADSVMSAKYEAAIEMKIPIMTKQWIE
AIWEANLKKVIKADDKIFNKYKCPVFMNLIVTSTNLPKRQKEEIKRLIHDYGGIFMGPLD
GTKVRVVLASENGPLSDKLKYAMENDIACLRIDWVYESIKVGYALPFRNFIIKSVKACST
PEKPNIRESLNCSEISSIAFDKPPNNYVNETLSSTISSFANLDAAISKFSGVAKLNVLDR
FTFGEAKLAGPFLDGCNIYLTGFATTVRDKLNKILNIGGATRLDEISDSVTHVIVGDASK
ASTELKMIKSRGLCPYILKVEWLEKSMKLKRPASEEHFLFEVKDGVSKNNIGTPASPLSK
KNLQMLQQPKRPPVPPFNLNKEIAPVNEDQQSDLVQQYLQETSDHRSLMQEFAKPSTILE
KDGDNLSMKSTHSNDICSSNTTQNKKSMESDNTVLLSQTINEKLLKDLMFVVTGFDSEDN
HVEETIVMLGGRLVSKTYIGIPDYAIVPVDGAPLKHTVNEIVTDLFIEDCINQEQIVDIM
YYHRPIFLRKLCNPLSGCVITMSMYTGSERIYLSTLAMKLGAVXRIFIINVHENKSDPET
TSRNILTPKRHLSQIKDAVSAETPLINKRLSLVINQTPQSPFHVSTPETPYGQVFKPNPS
PDTRKGWIKWVDNLPDLQVTEPPLKRRTPSTPLSDLKKQLWEKLKNAGQSEKEHKTDETT
IRHEDNNSFTERTEKKEADNQSNKTTPSTPINRKLNFNEKDTPISNNEINMQIAQLDQML
QRTSSTPENXYSLSGENTKKYSIGNNRTSKDNNVVLEEYTEKDVAENQYESSTTRKFMLS
GIKDRNAYERVIKDLGGDVSTDANFDNSATHLLCTRLSRNEKMLGSIAAGKWVLYCTYLR
DSEREGRFLDEEEYEWGNPKSKDKIPEPNGEMETAIATAAYKWRLRLQKELHGPFSDIVA
LLMVSEEKYDQFKRLIEAGGGVVIQARAPYDTSPSGRKITHCFVNVKQVNQPVDWAMLAN
KGILCFLPQYLSDYLTAVTPLNPRDCVLPEFKKYLTLLPK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgacgactcaggaaagccagatcgagtgcgacgtgaatattcactttgtcgtaccaaat
catcacgcctccgaagatgattgcagcgatgaaatgtggctggcatttaacaaatgctgc
gaatttagcatgcttccagaatggatcagtgagaaactctgcagtaagatgaaaccgtca
aaaaacgatgtatttgttatagaggaatttaagggagatttgtttaagatgttgaaaaac
tttaagtgctcaatagtatctccaaaatgtttactcatttgttttatgaatggagaacca
attccagaaggaacaagcccgatatatacaacatctatgagaggaatgtgtatttgtgca
tcaggttttagtacagaaattaaggatcagatacaacaaaaagtcgaatatatgggaggt
ttttttacaaagcaattaagaagttccgtcacacatttagtagcagattctgtgatgtct
gcaaagtatgaggctgctatagaaatgaaaataccaatcatgacgaaacaatggatagaa
gctatttgggaggcaaatttgaaaaaagtaattaaggcagatgataagatttttaataaa
tacaaatgtccagtttttatgaatctaatagttacttcaacaaatcttccgaaacgtcag
aaagaagagattaaacgtttgatacacgattatggaggaatattcatgggtcctctcgac
ggaacaaaagttcgagtagttttagcttctgaaaacggccccttgagcgataaactaaaa
tacgctatggaaaatgatattgcatgtctcagaatcgattgggtatatgaaagcattaaa
gtgggatatgctttacctttccgtaactttattattaaatctgtaaaggcgtgttcaaca
ccggaaaaacctaatattcgagaatcgcttaactgttctgaaattagctctatagcattt
gataaacctcccaacaattatgtaaacgagactcttagttcgacgatatcaagttttgct
aatttagatgcagcaattagtaaattttccggtgtcgccaagttaaacgttttggatcga
ttcactttcggtgaagcaaaattagctggaccttttttggatggatgtaatatttatctt
actggatttgcaacaactgttagagataaattaaacaaaatattaaacattggcggtgca
acgcgtcttgatgaaatatcagattctgtaacgcatgtgattgttggcgacgcaagtaaa
gcatctacagaactgaaaatgataaaatcaagaggtttatgtccttatatattgaaagtg
gaatggctggaaaagagtatgaaactgaaacgacctgcgtcggaagaacattttttgttt
gaagtcaaagatggagtatctaagaataatatcggaacacctgcttcaccactcagtaaa
aagaatttacaaatgttacaacaaccaaaaagacctcccgtaccacctttcaatttaaat
aaagagattgcacctgtgaatgaagatcaacaatctgatctcgtacagcaatatctgcaa
gaaactagtgatcataggagtttaatgcaggaatttgctaaacccagtactattttggaa
aaagatggagacaatttaagtatgaaaagtacacatagtaatgatatttgttcatcaaat
actacgcaaaataaaaaaagtatggaaagtgataatactgtgttacttagccaaacaata
aacgaaaaattacttaaagatttaatgtttgtcgtgactggttttgatagcgaggacaat
catgtagaagagacgattgtaatgttgggtggacgcttagtctcgaaaacatatattggt
attccagattacgctatcgttcctgtggatggagcacctttaaaacatacggtcaacgaa
atcgtaaccgacttatttattgaagattgtataaatcaggagcaaattgtcgacatcatg
tattatcacaggccaatatttcttagaaaactttgtaatccgttgtcgggatgcgtaata
acaatgagcatgtatactggatccgaacgaatatacctttcaacattggctatgaaacta
ggcgctgtgtaacgtatatttattataaatgttcacgaaaataaatcagatcctgaaact
acatcgagaaatattctgactccaaagcgccatttatctcaaatcaaggatgcagtttct
gctgaaactccattaataaataagagactcagtctggtaataaatcagacaccacaatca
ccatttcatgtatccactccagaaactccatatggacaggtttttaagcccaatccttca
ccagatacacgaaaaggatggatcaaatgggtagacaatcttccagacttacaagtgaca
gaaccaccattgaaacgacgtacacctagcactccgctttcagatttaaagaaacagcta
tgggagaaattaaagaacgcaggtcaatctgaaaaggaacataaaacagatgaaacaaca
ataagacatgaagataacaattcttttacggaaagaaccgaaaaaaaggaagctgacaat
caatctaataaaaccactccatcaactcctatcaatcgaaagcttaatttcaacgaaaaa
gatactccaatatcaaacaacgagataaatatgcaaatagcacaattggaccaaatgctt
caacgaacatcgagtactcctgaaaatnaatactcgttgtctggggaaaacacgaagaag
tattcaattgggaataatcggacaagtaaagacaataatgtggttctcgaagaatatacc
gaaaaagatgtcgcagaaaatcagtatgaatcatcgacaacacgaaaatttatgctgtcg
ggtataaaggatagaaatgcatatgaaagagtgataaaagatcttggcggagatgtgtcc
acggatgcaaatttcgataacagtgccacgcatcttttgtgcactagactctctagaaat
gaaaaaatgctcggcagtatagcagctggaaaatgggttctgtattgtacatatttacgt
gattccgagcgagaaggcagatttcttgatgaggaagagtatgaatggggtaatccaaaa
agcaaagataaaattccagagccaaatggcgaaatggagactgcaatcgcgaccgcagct
tacaagtggcgactaagattgcaaaaagagctacatggaccattttccgatatagtagct
ttattgatggtttctgaggagaaatatgatcaatttaaaagactgattgaagccggcggc
ggtgtagtcatacaagcaagagcgccttatgataccagtccatctggacgtaaaatcaca
cattgcttcgtcaacgtgaaacaggtaaatcaacctgtggattgggctatgctggctaac
aagggcatcctttgcttcttaccgcaatatctcagtgattatctgacggcagtaactccg
ctcaatccacgggattgtgtgcttccagaatttaagaaatacttgacgctactgcccaag
taa
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