Pogonomyrmex barbatus (red harvester ant): 105433512
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Entry
105433512 CDS
T04903
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar04382
Cornified envelope formation
pbar04512
ECM-receptor interaction
pbar04518
Integrin signaling
pbar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105433512
04518 Integrin signaling
105433512
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105433512
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105433512
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pbar04147
]
105433512
00536 Glycosaminoglycan binding proteins [BR:
pbar00536
]
105433512
Exosome [BR:
pbar04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105433512
Glycosaminoglycan binding proteins [BR:
pbar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105433512
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105433512
NCBI-ProteinID:
XP_011647172
UniProt:
A0A6I9WWT4
LinkDB
All DBs
Position
Unknown
AA seq
1839 aa
AA seq
DB search
MRPRAAATSRIIGDASRGISRPVPLVLRITCVLALLVLVATWIPIAEAVICRDSYKCNCT
GIKGQPGYPGIPGPQGPEGLPGDTGPDGPFGPKGEKGAGGEPGATGEKGYRGDDGIQGFG
GAPGLSGNPGLLGVMGPDGLDGCNGTDGRTGAPGLPGTFGPRGVMGPSGDYGLPGEPGEG
GINSEGSKGIRGNPGIDGPEGYPGQPGLTGEMGHPGDTGDFGLPGAPGLPGMQGERGDTV
YGVKGPRGEQGDRGEPGPPATDEHRKNENSTPVKGFPGPKGMRGFRGDRGRKGEMGAKGP
QGRPGYVGIKGMKGEQGEDGPRGKQGAEGPPGPAGEKGEKGAPGFAGMPGPDGQDGELGE
EGNRGPPGRQGAEGEPGLYIPELDEIIAGNIGIQGDLGPPGEPGQTGTPGLPGKVGFIGP
PGPPGPPGIPGLAGAKGSSIKGEQGDDGLSGTMGPQGPPGLPGLPGIMGAKGFPGVTIIG
PPGLDGNPGLPGLSGPPGDRGDPGPPGEKGFPGKGIRIRGPTGERGLPGTPGIPGPDGWP
GSPGFKGIKGFRGDDCGICAPGLPGEKGERGEPGLDGYPGASGFPGLPGPRGYKGIQGKR
GPQGPAGLEGDSGRPGIAGVQGPKGQPGRIFFPQNKTKGSPPGDFGEKGLPGPEGLRGPR
GRPGPIGSPGIPGPKGDKGDHGLPGLPGRDGLPGWDGIPGEKGENASISRLEFLRGDSGY
PGVKGIKGIQGESGKKGEPGNTAEYYVKATGDKGYKGIRGAPGEPGFKGFQGHPGDEGLP
GLPGERGSPGISLQGPIGLKGYPGMPGDQGFRGTPGSPGSQGPVGFPGRIGNKGERGDPG
TNLTYGEIGERGWYGPKGDTGDFGPQGLPGRPGQDGPKGIKGAKGAPGFEGLPGLQGAKG
QRGDSIQGDRGFPGISGQPGMPGRIGDVGLRGPDGPSGFDGMKGLKGEIGFIGRRGDDGD
VGPQGYEGLHGMQGQPGAPGEKGDVGDVGEPGPLGWSGFDGIDGAPGVKGERGDIGVPGL
PGVRGPPGLKGIIGDIGLEGLSGIRGENSFSGPQGDQGEPGFMGEPGPPGLAGFDGRPGL
PGEPGFGPDGFNGLPGEKGEPGFDGYDGIIGPKGEIGDMGPDGVKGERGEPGFPGRPGGP
GIPGRHGTKGERGPIGPPGFDGLKGKPGVDGDPGIMGRPGMPGEPGVRGIPGIMGAPGSK
GYVGEPGLPSYAFASKGDYGNRGHDGFVGAKGQIGEPGYHGIPGRKGQIGDRGYPGPTGF
PGLPGFPGLPGDEGPRGAPGLPGEFAEPGEPGRAGLDGMPGIPGRAGQKGAPGEYGPDGP
KGISGDIGHSLRGPKGMIGEPGPRGFVGIPGMPGLEGLQGFPGAPGLKGFRGDQGLPAES
TRGQSGDSGWPGLDGLVGPKGMKGDSGLPGFDGLPGLKGEPGETGEPGLRGLPGPEGPQG
PKGEPGINPFPPFPRRGLPGDVGMVGLPGFAGPQGIMGEPGKDGLPGRQGERGMIGFTGP
QGSDGKDGPPGYQGPPGATGRQGQPGFPGPPGLPAPNGIGPRDRGFYFARHSQSEMIPIC
PRNTVKIWEGFSLLHTMGNGRAYAQDLGAAGSCIKKFSTMPFLFCNLNNVCDYANRNDYS
YWLSTTEPMPMMMTPIPAPEVGRYISRCSVCETPTRVIAIHSQSMTIPECPGGWEEIWIG
YSFLMHRDAGADGGGQSLVSPGSCLEEFRVRPFIECRGLGTCNYFATATSYWLATIRDDE
MFRRPLQQTLKADHTSRVSRCAVCLRRRTTEILKPFTSNNERTPNNWGIAPPASPPRYDP
SRTQASRGRYSSQRRIPYHYRRRGHIRGKQRSTESPNNL
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccagggccgcggcgacgtcaagaatcatcggcgacgcgagccgcggcatctcg
cggccggtcccgctcgtcctgcgaatcacctgcgtccttgccctactggtgcttgtcgcc
acgtggataccaatcgccgaggctgtgatttgcagagactcgtacaaatgcaattgtacc
ggaataaaagggcagccaggatatcctgggatacctgggccacaaggaccagaaggactc
ccaggtgacactggacccgatggcccctttggacccaaaggcgagaaaggagcaggagga
gagcctggagctaccggagaaaagggctaccgaggcgacgatggtatacaaggatttggg
ggagccccgggactttccggtaatcctggtttacttggtgtgatgggtccagacggattg
gacggatgcaacggaactgacggtcgtaccggtgcaccgggactgcccggaactttcggg
ccccgtggggtaatgggaccctctggcgattatggtttgccgggagaacctggtgaggga
ggtatcaattcagaaggctccaaaggaattcgcgggaatcccggtatcgatggaccggag
ggttatccaggacagccgggtctcaccggcgagatgggccatccaggagacacgggcgac
tttggtctaccaggtgctccaggcttgccaggcatgcaaggtgaacgcggtgacactgtc
tatggtgtaaaaggtccacgtggcgaacagggagacagaggagagcctggaccaccggct
acggacgaacacaggaagaatgaaaattcgacgcccgtaaagggttttccgggaccaaaa
ggcatgagaggcttccgaggcgaccgaggtcgcaaaggagagatgggcgccaaaggacca
cagggtcgaccaggttatgtaggtatcaaaggtatgaaaggagaacaaggtgaagatgga
ccaagaggtaagcagggagccgagggcccaccaggtccagctggtgaaaagggagaaaag
ggagctccaggattcgctggaatgcctggtccggacggacaagatggagaacttggagag
gaaggaaatcgtggcccacccggcagacaaggggctgaaggagaacctggactgtatatc
ccagaacttgatgaaataatcgccggaaatattggaattcaaggagatcttggacctcct
ggtgaacctggtcaaacaggaacaccgggtctgccaggaaaggtcggctttataggaccg
ccaggaccaccaggacctccaggtatccctggtttagcgggagcaaaaggttcatccata
aaaggagagcaaggagacgatggcttatcaggcactatgggacctcaaggacctcccgga
ttgcctggcttacccggaattatgggagccaaaggatttccgggagtaacgataattgga
ccaccgggactggatggcaatccaggccttccaggattgtcaggtccacccggtgatcgt
ggtgaccctggtcctccaggagagaaaggttttcctgggaaaggtataagaattcgtgga
ccaactggagaacgcggtctaccgggaacaccaggtattcctggtcccgatggttggcct
ggttctcctggctttaaaggtatcaaaggttttcgaggagacgattgcggcatatgtgct
ccaggtctacccggtgagaaaggagaacgtggtgaacctggcttggatggatatcccgga
gcttccggtttccctggactacctggtccacgaggatacaaaggaatacaagggaaacga
ggcccacaaggaccggcgggacttgaaggtgacagtggaagacccggtattgcgggagtt
cagggacctaaaggacaaccgggaaggatattcttccctcaaaataaaacgaaggggagt
ccgccaggcgacttcggcgagaagggcttacctggtcccgaaggtcttagaggtccacgg
ggacgtccggggcccattggaagcccgggtataccaggaccgaaaggagacaaaggtgat
catggtcttcctgggttaccgggaagagatggtttgccaggatgggacggcattcctggt
gaaaaaggtgaaaatgcgtcgatatcaagacttgaatttttgcgtggagattcaggatat
ccgggagtgaagggaatcaaaggaatacaaggagagagcggtaaaaagggagaacctggt
aataccgcggagtattatgtaaaagctacgggtgataaaggctacaaaggaatcagagga
gctcctggcgaacctggctttaaaggtttccaaggacatcctggcgacgaaggtctacca
ggattgcctggtgaacgaggttctccaggaatttcacttcaaggtcctattggcttaaaa
ggataccctggaatgccgggagatcaaggttttcggggtacaccaggttcacctggatca
cagggaccagtgggtttcccgggtcgcattggtaacaaaggtgaacgaggagatccgggt
acaaatttaacatacggtgaaattggagaacgcggatggtatggtccaaaaggtgacacc
ggcgattttggtccacaaggattgcctggtcgaccaggacaggatggtccaaagggtatc
aaaggcgctaagggagcgcctggtttcgaaggattacctggacttcaaggagccaaaggt
caacgtggagatagtattcaaggtgatcgtggatttccaggaatatctggccagcctgga
atgcccggaagaatcggagatgtcggtctccgtggtcctgatggtccttctggtttcgat
gggatgaaaggcttgaaaggggaaattggctttattggacgacgtggtgacgatggtgat
gtgggccctcaagggtacgaagggttacacggaatgcaaggtcaaccaggtgctccagga
gagaagggagatgttggcgatgtcggcgagccaggaccacttggttggtccggtttcgat
ggtatagacggagcacctggtgttaaaggagaaagaggagacattggagttcctggttta
ccaggagtgaggggaccacctggactcaagggtatcatcggtgatattggtctcgaagga
ttatcaggaatccgtggtgaaaattccttcagtggtcctcaaggtgatcaaggtgaacct
ggttttatgggggaacctggaccgcccggtctagctggattcgatggacgaccaggatta
ccgggagaaccaggattcggccctgatggtttcaatggtttaccaggagaaaaaggcgaa
cctggatttgatggctatgatggtatcataggaccaaagggagaaattggtgatatgggt
cctgatggagtaaaaggtgaacgaggcgagccaggtttcccaggaagaccaggtggacct
ggaatacccggtagacatggtacaaaaggtgaaagaggcccaattgggccacctgggttt
gatggtttgaaaggaaaaccaggtgtcgatggtgatccaggtataatgggcagaccagga
atgccgggtgagccgggtgtgaggggaatcccaggtattatgggtgcccctggatcaaaa
ggttacgtaggtgaacctggtttaccatcttacgcatttgcgagtaaaggtgattacggt
aatcgtggccatgatggtttcgttggtgcgaaagggcagataggtgaaccaggatatcat
ggcatacccggccgtaagggtcaaattggagatagaggctatccaggtcctaccggtttc
ccaggattacccggtttccctggtttaccgggtgatgaaggacctcgtggagctccagga
ttgcctggtgaattcgctgaacccggtgaaccgggtcgcgctggtctcgatggtatgcct
ggtattccaggacgtgcaggacaaaaaggagctcctggtgaatatggcccagatggacct
aaaggaatttctggtgatataggtcatagtcttcgcggtcctaaaggaatgatcggagaa
ccaggtccccgaggatttgtcggtataccgggtatgccaggattagaaggattgcaaggt
tttcctggggcaccaggactgaaaggtttccgtggagatcagggattacctgctgaaagc
actagaggacaatctggcgattctggatggcctggattggatggtctagtcggaccgaag
ggaatgaaaggtgattctggtttacctggttttgatggattaccaggtctgaaaggagaa
ccgggagaaactggtgaacctggtctacgtggattgcctggtcctgaaggaccacaggga
ccaaaaggagaacccggcataaatcctttcccaccgttcccaagacgaggtcttcctggt
gatgtaggaatggtcggattaccaggttttgctggaccacagggaataatgggtgagcct
ggtaaggatggcctaccgggacgacagggtgaaagaggaatgattggatttactggacca
caaggatcagatggtaaagatgggcctcccggatatcaaggacctcccggagcaaccggc
cgacaaggacaaccaggtttccccggcccacctggattacctgcgccaaatggaattggt
ccaagagaccgaggattctactttgctcgtcattcacagtccgagatgataccaatttgt
ccaaggaatactgtaaagatctgggaaggattttctctattgcatacgatgggtaatgga
cgagcttatgcgcaggatcttggcgctgctggcagttgcatcaagaagttctccactatg
cccttcctattctgtaacctgaacaatgtatgcgattacgccaatcgtaacgattacagt
tattggcttagtacaaccgaacctatgccgatgatgatgacaccaataccagctccggaa
gttggtagatacatatcgagatgctctgtatgcgagacgccgaccagggttatagctatt
cacagtcaatctatgacgatacctgaatgtccgggtggttgggaggaaatttggattggc
tacagtttcctcatgcacagagatgcaggtgcagatggcggcggccagtccttagtttca
cctggatcctgcttggaggaattccgcgtcaggccatttatcgaatgtcgcggtcttggc
acgtgcaattactttgccacagccacgtcgtattggctggcaactattcgcgacgacgag
atgttccgcagaccgctgcagcagactcttaaagctgatcacacgtcccgtgtgagccgt
tgtgccgtatgtcttcgccgaaggaccactgaaattctgaaacccttcacatcgaacaat
gagcgaactcctaataattggggtattgctccaccggcatcaccacctcgctatgatcct
tctaggacacaagctagccgaggaagatattccagccagagacgtataccctatcattat
cgcaggagaggtcatattcgtggaaagcagcgatcgacagagtctcccaacaatctgtag
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integrated database retrieval system
