Pogonomyrmex barbatus (red harvester ant): 105433571
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Entry
105433571 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: alpha-protein kinase 1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105433571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pbar03000
]
105433571
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105433571
04121 Ubiquitin system [BR:
pbar04121
]
105433571
Enzymes [BR:
pbar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105433571
Transcription factors [BR:
pbar03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
105433571
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105433571
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105433571
Ubiquitin system [BR:
pbar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105433571
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nup35_RRM_2
zf-C3HC4_2
zf-UDP
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
105433571
NCBI-ProteinID:
XP_011647246
UniProt:
A0A6I9X3Q0
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MSVLNQSGEDAVECPLCMEPLEVDDLNFFPCTCGYQICRFCWHRIRTDENGLCPACRKAY
SENPADFKPLSKEEISRLKAEKRLKDQQRKQRVTENRKHLANVRVVQKNLVFVVGLPMRL
ADADVLKKHEYFGKFGKIHKVVINQSTSYAGSQGPSASAYVTYQRQEDALRAIEAVNNIV
VDGRTIKTSLGTTKYCSHFMRNQVCPKPDCMYLHDLGDQEASFTKEEMHQGKHQEYERKL
VQSLHAHASSVQRKPTPSPPVTGSIVSRESGTVNSQTKEAWPSLQPGQTNSTQNNCKEIS
PPVQTTSQHSNVTSGNGMVAQQSHVSSGVSTHQQNNNNKGESGVGVRRGKSNSESKAQAA
RNKHKNSQNKEKHGTRVTSRSESSSINMQSNSQSQITGQKDVRNFSADTNSDMLQKLGNK
CKMEQQQQQQQPLQSQQSSNKTSKLVQLQSHEVKVNGAFQNGERRYSDSETDQQREGSTP
ASTISSTEDSNVNHQTEHLAESSEENSGAILLGSSPASTNSSQGANQPPPPGLHNGSQMQ
INHRSIFQADNNXFFSSNTFQKIPTTTSMPSNSLAANTSLDWTNTGVATIPDSLPTVHSS
EDWQAAFGFQPESSRTNHILSKSSSSDSPRVTFNSESFVEEEVYINAPYTATLTEPSSGT
FTANLLVNSPASKFMADFQQNSLQQRLNIQAQQTQENCEYIKQNGHVTMEEIRNHHDAGS
DTVKADDDLGFDPFHETQKALAELLAEDEMQVQQQKIFQQQQQREREEQTRVQQQQTLAN
LSQQHFPQVAHIAHLQQQAQHLQNLQVLQSHSLLSRLPQNLLPSGAQSPAQGTVTATNLG
QRSRLPPPGFPGSTPNHMNSFGLGIPRPAPTNSALSGAQPSQQSAYLPNGSSLLNTQSIG
KCTGDAVYALKDWCEINSQQQQFHHQALHQKGWNNFGPIADWTSIDPAIVTSSRPLPFQT
TSTWQFPHIHPSHVVTHNAQQEQNAPAQHWAMQPPPGFAAPTTTGQLNNPQSSTTAQPHT
KLISAGSEIESKLIAIKLRAN
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtattgaatcaaagcggcgaggatgcagtggaatgccctctgtgtatggaaccg
ttagaagtggatgatctgaatttcttcccatgcacttgcggataccaaatatgccgtttt
tgttggcacagaattcgtaccgatgagaatggcctgtgtcctgcatgtcgaaaggcctat
tctgaaaatccggctgattttaaaccccttagcaaggaagaaatatcaagattaaaagct
gagaagagattgaaagatcaacaacggaagcagagagttacggaaaatcggaaacatcta
gcaaatgtgagagtagtacaaaaaaatttagtgtttgtagtaggattaccaatgcggctg
gcagatgctgatgttttaaagaaacacgaatattttggaaaatttggcaagatacacaaa
gtcgtaattaaccagagtacttcctacgcagggtctcaaggccccagtgcttcggcttat
gttacttatcaacgtcaagaggatgcgttacgtgctatagaggctgtgaacaacattgtt
gtggacggacggacaataaaaacatcattaggaacgacgaagtactgttcgcattttatg
cgtaatcaagtctgtccgaagccagattgcatgtacctgcacgatcttggggaccaggag
gcatcctttacgaaggaagagatgcatcaggggaaacatcaggagtatgagcgcaagctt
gtgcaatcgttacatgcgcacgcatcttcagttcaacggaaaccgacaccatcaccacct
gtaacaggcagtattgttagtagggaaagtggaactgtaaattcgcaaactaaagaggcg
tggccttcgttgcaaccgggacagacaaatagtacacaaaacaattgtaaagaaatatca
ccacctgtgcaaacaacttcacaacacagcaatgtaacaagcggaaatggcatggtagct
caacaaagtcatgtgtcctccggggtgtctacgcatcaacagaataataacaacaagggt
gaaagtggtgtgggtgtacgacggggtaaaagtaatagcgaaagtaaagcacaggcagct
cggaacaaacataaaaatagtcaaaacaaagagaaacatggcactcgtgtgacatcgcga
tctgaatcaagctcaatcaacatgcaaagtaattcacagtcacaaattaccgggcaaaaa
gatgttagaaacttttccgctgatacgaacagtgatatgttgcaaaaattaggtaacaag
tgtaaaatggagcaacaacagcaacaacagcagccgttacaatctcaacaaagtagcaac
aaaacatcaaaattagttcaattacagtctcatgaagttaaagtaaatggtgcatttcaa
aacggagaacgtcgatattcggacagtgaaacggatcaacaacgtgaaggtagcacgcca
gcaagtacaatttcgagcacggaagattcgaatgtaaatcatcaaactgaacacttagct
gaatctagtgaagaaaacagtggtgctattcttttgggttcgtctccagctagcacaaat
tcatcacaaggtgccaatcaaccaccaccaccaggactacacaatggatctcaaatgcaa
atcaatcatcggtcgatctttcaggcagacaataatnagtttttcagttcaaacaccttc
cagaaaataccaactaccacttcgatgccatcaaattcccttgcagcaaatacaagtctg
gattggacgaacacaggagtggctacgatacctgattctttaccgacagttcattctagc
gaagattggcaagctgctttcggtttccaacctgaatcgtctcgaacgaaccatatttta
tcaaaatccagctcatctgattcgccgagagtgacattcaattctgaaagttttgtagaa
gaggaagtttatataaatgcaccgtacactgcgacacttacagaaccatcatctggtacc
ttcacagctaacttacttgtaaattctcccgcgtctaaatttatggcagactttcaacaa
aattcattacaacaaaggcttaatatacaggcacaacaaactcaagaaaattgtgaatac
ataaaacaaaacggccatgttacaatggaggaaattcgaaatcaccatgatgcaggctca
gatacagtaaaagcagatgacgacttaggttttgatccgtttcatgaaacgcagaaggca
ttggccgaacttttagctgaagatgaaatgcaggtgcaacagcaaaagatattccaacaa
cagcagcaaagagaacgagaagaacaaactagggtgcagcaacaacaaactctggcaaat
cttagccaacagcattttccacaagttgcacacatagcacatcttcaacaacaagctcag
cacttgcaaaatctacaagtgcttcagtcgcattccctcttgtcccgtcttccgcaaaat
ttattaccaagcggcgcccagagtcctgcacagggcacagtgacggctaccaacttagga
caacgcagtcgccttccgccaccgggttttcctggttccacgccaaatcacatgaattca
ttcggtctcggtataccgcgaccagcaccaacgaatagtgccctctctggagcacaacca
tctcaacaaagtgcgtatcttccaaatggaagttcgcttctcaacacacaaagtatcgga
aagtgcacaggtgacgcggtgtatgccctgaaagattggtgtgaaataaacagtcaacag
cagcagtttcatcatcaagcgttgcatcagaaaggatggaacaatttcggacctatcgca
gattggacttcgattgatccggctatagttacttcgtctagacctcttccattccaaact
accagcacatggcagtttccccacattcatccttctcatgttgtaactcataacgcgcaa
caggaacagaacgcacccgctcaacattgggcgatgcaaccacctcctggctttgctgca
cccacaaccacagggcagttgaataatccacagtctagtacgactgcacaaccgcacact
aagctcatctctgcaggatcggaaatcgaaagtaagttgatcgcgatcaagctccgtgca
aactaa
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integrated database retrieval system
