Limihaloglobus sulfuriphilus: SMSP2_00247
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Entry
SMSP2_00247 CDS
T04749
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbas
Limihaloglobus sulfuriphilus
Pathway
pbas03030
DNA replication
pbas03430
Mismatch repair
pbas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMSP2_00247 (dnaE)
03430 Mismatch repair
SMSP2_00247 (dnaE)
03440 Homologous recombination
SMSP2_00247 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbas03032
]
SMSP2_00247 (dnaE)
03400 DNA repair and recombination proteins [BR:
pbas03400
]
SMSP2_00247 (dnaE)
Enzymes [BR:
pbas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SMSP2_00247 (dnaE)
DNA replication proteins [BR:
pbas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SMSP2_00247 (dnaE)
DNA repair and recombination proteins [BR:
pbas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SMSP2_00247 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Snx8_BAR_dom
Motif
Other DBs
NCBI-ProteinID:
AQQ69913
UniProt:
A0A1Q2MB11
LinkDB
All DBs
Position
337587..341093
Genome browser
AA seq
1168 aa
AA seq
DB search
MYSFEFDFNRRQVYNMSDKGFCHLHLHTQFSLLDGGIVPKKLFARCKELGMDTVAITDHG
NLFGIIDFYRNAIAAGIKPIIGMEAYFSATSRFDQNTTSKDNHHLILLARNKEGYQNLLK
LSSLAYTEGFRYRPRIDEELLRQFGSGLIGTSACMSGEIPRLLAMDRPQEARAAAERYCD
IFGEGNFYIELQRHDFVEQDVFDQTPMLADLAREMGIGMICSNDVHFLNKDDYEAHDALT
CISTGKLVSDKNRMKYPPSVYLKSPLEMRELFHDFPEACDNTLEIAKRCDIEIDLQARHA
PSFTPPKGAAPGQYLRELVYDGAKRLYGEITDEVRRRIEREIEVIDGKGFSSYFLIIWEL
CNWAAEHGIPTGARGSGVGTIVGYCLGLCNVDPIKYGLLFERFMDPERNEMPDIDIDMCQ
DGRPRLLEYVREKYGDIAQITTFGTMKAKGVVRDVSRVLDVPLAKANELAKMIPEDLKMT
LDKALEENREIKDKYESDPEVRHVFDIGRKLEGLARHSSVHACAVVIADEPLTNFLPVYK
QSGSDDLITQFEGPDVEAVGLLKMDFLGLKTLSVIEAAKKWVEAIHGEKIDIEAINLEDP
KVFEVFGSGRTKGVFQFESDGMADLLMKLKPDRVEDLIAANALYRPGPMALIPDFIAYKH
GEKQWSVPHPIMEDILEETFGIMVYQEQVMQVCHKLGDIKLREAYKLIKAISKKKEKVIA
KAKEQFVKGCVDKGLQAKQADEIFELIRKFAGYGFNKSHASRYSIVAYQTAYMKAYWPCE
FMASLLTYEHETSKIVLYIKECKTLGIDVLPPDINESFTNFTVVYDNEDARKAREGKIRF
GLGAVKGVGGKAVDKVIEAREKVGSFKSLFHFCENVDLRSLNKQVIEALIKAGAFDRLGG
SRAQHMAAVENAIKFGQDSQADAKSGQMSLFGDMEDAASLGKSDAASLPDVPAWPEMQML
RYEKDVLGMFVTSNPLSKHADTITAYSTAHTDELSSLGSDADVVIGGIITQIRYRIVQKG
SRAGSKWAIVHIEDFNGETEAKLFTEVLSRYGHLLEEDKVVFIQGKIDHFREKPCISCEK
VIDLSCVDKELSTTIRLRFRSEDIKPDLVSNIKALCRLHPGKSPVYAVVQSGDMLVQLDL
GCRVAPLVEFRDQLRQIVGDTGFELARR
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtactcatttgaatttgacttcaaccgcaggcaggtttataatatgtccgacaaaggc
ttttgccatctacatttacatactcagttctcattgctcgatggaggtatagtgcccaag
aaactctttgcccgctgcaaagagctgggcatggataccgtggcgatcaccgaccatgga
aacctcttcgggattatcgacttttacagaaacgccattgctgcgggtataaaacccata
atcggcatggaggcgtatttctcggcgacttcgcgttttgaccagaatacaacctcaaaa
gacaaccatcatctaattctgcttgcccgcaataaagagggctaccagaacctgcttaag
ctcagctctctggcttataccgagggttttcgctaccgcccgcgtatcgatgaggagctt
cttcgtcagttcggcagcgggcttataggcaccagcgcctgtatgtccggcgagattccg
cgtcttctggcgatggacaggccccaggaggcacgggccgcggcagaaaggtactgcgac
atattcggagagggcaacttttatattgagcttcagcggcatgattttgtagagcaggat
gtgtttgatcaaactccgatgctggccgacctcgcccgtgagatggggattggcatgatc
tgctcaaatgatgtgcattttctcaacaaagacgactacgaggcccatgatgcgcttacc
tgtatcagcaccggcaagctggtcagtgacaaaaaccgcatgaaatatcctccaagcgtg
tacctcaagagccccctggaaatgcgggagctgttccatgatttccccgaggcctgcgac
aacacgcttgagatagctaaacgctgcgatattgaaatcgatcttcaggctcggcacgcc
ccgtcttttactccgccaaaaggcgccgccccgggccagtacctgcgtgagcttgtatat
gacggagcaaaaaggctttatggcgaaataaccgatgaagtccgccgccgtatagagcgc
gagatagaagttatagacggcaagggtttttccagctatttcctgattatatgggagctg
tgcaactgggcggcagaacacggcatacccaccggtgccaggggcagcggtgtcggcaca
atagtgggctattgtctgggtctgtgtaatgtcgatccgataaaatacggacttctcttt
gagaggtttatggatcccgagcgtaatgagatgccggatatcgatattgatatgtgccag
gacggcaggccgcgtctgcttgagtatgtcagagaaaagtatggtgatattgcccagatt
accacgttcggcaccatgaaagccaagggcgttgtgagggatgtctccagggtgctcgac
gttcctctggcaaaggccaatgagctggcgaaaatgatacctgaagacttgaaaatgacc
ctggataaggcacttgaagaaaacagagagatcaaggataaatatgaaagcgatccggag
gtaaggcatgttttcgatatcggcaggaaactcgaaggtcttgcccgccacagctctgtt
catgcctgtgcagtggttattgccgatgagccgctgaccaactttttaccggtttataaa
cagagcggctccgatgaccttattacgcagttcgagggccctgatgttgaggccgtgggg
ctgctgaaaatggattttctcggccttaaaacacttagcgtgatcgaagcggcaaaaaaa
tgggtagaagcaatccacggtgaaaaaattgatatagaagcaatcaatctcgaagacccg
aaagtctttgaggtttttggttccggccgcacgaaaggtgttttccagttcgagtccgac
ggaatggcggatttgctgatgaagctcaagcccgaccgtgtggaggatctcatcgccgct
aacgcactgtatcgccctggcccgatggcgcttatacccgattttatcgcctataagcac
ggcgaaaagcagtggagcgtgccgcaccctatcatggaagatatccttgaggaaaccttt
ggtataatggtttaccaggagcaggttatgcaggtctgccacaagctcggcgatatcaag
ctgcgggaggcgtacaaactgattaaggcgatcagcaagaaaaaagaaaaggttatcgcc
aaagccaaggagcagttcgttaaaggctgtgttgataagggccttcaggcaaaacaggcc
gatgaaatatttgagcttatccgcaagttcgccggctatggttttaataagagccacgca
agcaggtattcgatagtcgcgtatcagaccgcctatatgaaggcgtattggccgtgtgaa
tttatggcctcactgctgacctacgagcatgaaacttccaagattgtgctttatatcaaa
gaatgcaaaacacttgggatcgatgtattgccaccggatataaatgagagctttaccaat
tttactgtggtttatgacaacgaagatgcccgcaaagcccgtgagggtaagatacgtttc
gggcttggtgcggttaagggtgttggcggcaaagctgttgataaggttatagaagcccgt
gagaaggtcggcagctttaagagcctctttcatttctgtgaaaatgttgacttgagaagt
ctgaataagcaggtgattgaagctcttataaaggccggcgcgtttgaccgtcttggcggc
agccgtgcgcagcatatggcggctgtggaaaatgctataaagtttggccaggattctcag
gccgatgccaaatccggccagatgagcctgtttggcgatatggaagatgccgcttcactt
ggcaaatctgatgccgcgagtctgcccgatgttcccgcatggccggagatgcagatgctg
cgttatgaaaaagacgtgctcggcatgtttgttacgtccaacccgctcagtaaacacgcc
gacacaatcacggcgtattcgaccgcccataccgatgagctctcttcgctgggcagcgat
gcggacgtggtcattggcggtatcataacccagataagatacagaattgtgcaaaaaggt
tcccgcgccggctctaaatgggctattgttcatatagaggattttaacggagagacagag
gcaaaactctttaccgaggtgctctcgcgttacggtcatctgcttgaagaagacaaagtc
gtcttcattcagggcaagatagatcattttcgcgagaaaccgtgtatcagctgcgaaaag
gtaatcgacctttcctgtgtggataaagagctctctaccacaatccgtttgagattccgt
tcggaggatatcaaaccagatctggtaagcaacatcaaagctctatgccgtctgcatccg
ggtaaaagtcccgtctatgccgttgtgcagtccggagatatgctggtgcagctggatctg
ggctgccgggttgccccactggtagaattcagggatcagctcaggcagatagtcggcgat
acgggttttgagctggcacgccggtag
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