Limihaloglobus sulfuriphilus: SMSP2_00399
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Entry
SMSP2_00399 CDS
T04749
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
Organism
pbas
Limihaloglobus sulfuriphilus
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HEPN_Swt1
ResIII
DEAD
AAA_34
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AQQ70061
UniProt:
A0A1Q2MBK4
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Position
complement(522282..525812)
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AA seq
1176 aa
AA seq
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MNDVTPKMVALQQLISEGLCKWLESRLLKMSGKWWKEYVIPNLSYQQNEMVKRSNIKSLA
RLDLAALLRIFEKNWYNLSDKEPSLTPENKCYLHEMKIVRNRWAHVSSEGINAKDVNRDL
DTIQRFAESWDENKLVQEAAGQLKKNLLKEVPSTPSEKSNLTTETMKKTATGLEIGNIIC
LKSDKNKKGAVTGIKLTDTEAIITVFIDGDNKIFYESQIEPAETSKQSKSTIDQLHRKLT
ALQLKNPSVDKLYSLNAARIDIVPYQFMPVMKIIKSEQPRILIADGVGVGKTIEAGLIMR
ELQARKEVESVLVICPKPLVTEKKWFSEMKRFDEDFTELDGKSLKYCLDETYKECWPQQH
NKTILTYSLFSEITVEGDRKRHLKGIEDLADDIKFDMVIVDEAHHIRNSNTYGYRAVECF
CRNAESVVFLTATPVQMGNSDLYTLLNLLRPDLIVDLDSFKYLVEPNPHINKALSFARIG
GHDWQIKALNALQKAECTRYGQTAYKNTEFQNLTKKLNKDTLDSKARVSAISAIEGFHSF
ASIINRTRRRDIADFCVRNVETVEVDFTNEQRIFYDAILQFEIERLGRSHGGINIKWMTS
TIRRQLSSCVYGLTPFIKEITDKKLSAIANCSISDDEIDLTGEDIEYLRSLSAEIEECLH
KLPEQDPKYDALKKIVDQKISMPNNKLMIFSSFRHTLNYLAGKLKGAGIRIGLIHGDIPD
EVRVTLRNRFEKDKTDEDAIDVLLFSEVGCEGLDYQFCDAMVNYDLPWNPMRIEQRIGRI
DRRGQKSEAVAIYNLIVKGTIDADIYSRCLLRIGVFKESIGDCEEILGEITEKLRDIATN
LELTDQQRQEKLKQLADNEVLQIEKQRELEDHQHQFFGLQVPTNNAQQKLESGESYWLSP
QAIRLLVETYLLSRCGEGEYILGRQPLKTLRLSKEARQRLLADFKSLSLDKSRLNRQWQR
WLEGADQVCRLTFDGECASDNREAQFIMPLHPLVKQAVMIVDTKKMSCLTVRVSTDITQP
GEYRFMIFTWAKQGFVQDMELIAVCEDPDLEENLFALLQETVDYEYSGTVSKDDYSDVEK
RHYTLWKNANKEHKQKTIEVCNIKLDSLRTSHNAKSAVLQSQLDSADNEKIRRMKQSQLE
NTEAAYQRRKSKIEEAKEKADIHTEPVAYGIIKIGH
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatgtaacgccgaaaatggtagcacttcaacagcttataagcgaggggctttgc
aagtggctggagagcagattgttaaaaatgtcgggaaaatggtggaaagagtatgtaatt
ccaaacttatcttatcagcagaatgaaatggttaaacgcagtaatatcaaatctttagca
aggcttgacctagctgccttactgcgaatatttgaaaaaaactggtataacttaagtgat
aaagagccgagcctaactcctgaaaacaaatgttacctgcacgaaatgaaaattgtgagg
aaccgatgggcacatgtttccagtgagggtataaacgcaaaagatgttaaccgtgatctt
gacacaattcagcgatttgcagaaagctgggacgaaaacaaattggtgcaggaagctgcc
ggacaattgaaaaaaaatcttttaaaagaggtaccgtcaactcccagtgaaaagtctaat
ttaacaacagaaaccatgaaaaaaaccgctacaggcttagaaatcggcaatatcatatgc
cttaagagtgataagaacaaaaaaggagctgttactggaataaaactaacagacactgaa
gctataataaccgtattcatagatggtgataataaaattttctatgaatcacagatcgag
ccggcagaaaccagcaaacaatctaaatccacaatagaccaactgcaccgcaaattaacc
gcattacaattgaaaaacccgtctgtagataaactatactctcttaacgccgccagaatt
gatattgtcccttatcaatttatgccggtaatgaagattatcaaatcggaacagccgcga
attttgatagctgacggtgttggagtaggtaaaactatagaggccggattgataatgcgc
gagcttcaagcccgcaaggaagtagaatccgtcttggttatctgtcccaaaccgcttgtt
actgagaaaaagtggttcagcgaaatgaagcggtttgatgaggattttactgaacttgac
ggtaagagcttaaagtactgtttagacgagacatacaaagagtgctggcctcaacagcat
aataaaacaattctaacatattcattattcagcgaaataacagttgaaggagacaggaaa
cgccatttaaaaggtatagaagatttagccgatgacataaaatttgatatggtgatagta
gatgaggcacatcacataagaaacagtaatacatatggttatagagctgtagagtgtttt
tgccgcaacgccgaatctgtggtttttcttaccgctacgcctgtacaaatgggaaacagt
gacctttacactctgctgaatcttctacgccctgatcttatagtcgatctggacagcttt
aagtatctggtagagccaaatccgcatatcaataaagccttatcttttgcaaggatcggc
ggccatgactggcagataaaagctttaaatgccctgcagaaagcggaatgtacccgatat
ggtcaaaccgcctataagaacacagaattccaaaatttgaccaaaaagctcaataaggat
actctggattctaaagcgagagtctctgccatatctgcaatagaaggttttcacagtttc
gcttcaataataaatcgtacacgccgcagagacattgctgatttttgtgtacgtaatgtc
gagacagttgaggttgatttcaccaatgaacagcgaatcttctatgatgcaatacttcaa
tttgaaattgaacgcttaggccgcagtcacggcggaataaacattaagtggatgacctct
actattcgccgacagctatcaagctgtgtatatggtctgacaccattcatcaaagaaatt
accgacaaaaagctatcagcgatagccaactgcagcatatctgatgatgaaattgatttg
acaggtgaggatattgaatatctacgaagtttatccgccgagatagaagaatgtctgcac
aaacttccagaacaggatccaaaatatgatgctttgaaaaaaatagttgatcagaaaatt
tctatgccgaacaacaaattgatgattttcagctctttcaggcatactctgaactatctc
gccggcaaactaaaaggcgcaggcataaggattggtttgatacatggcgacatacctgat
gaggtacgggtgacacttcggaacagattcgagaaagataaaactgatgaggatgccata
gatgttctgctgttctcagaagtcggatgtgaggggttggattatcaattctgcgatgca
atggttaattatgacctgccgtggaatccaatgcgaattgagcagagaataggccgtatt
gacagacggggtcagaagagcgaggctgtggcaatatacaacctgattgtgaagggtact
attgacgctgatatctattcccgctgtctgttgcgaataggagttttcaaagaaagcata
ggcgattgtgaagaaatactgggcgaaataaccgaaaaacttcgcgacattgctaccaac
ctggaacttacagaccagcagagacaggaaaagctaaaacagcttgctgacaatgaggta
ctccagattgaaaaacaaagagagcttgaggatcaccagcaccagtttttcgggcttcag
gtgccaacaaataatgctcagcaaaaactggagtccggcgagagttactggctcagcccg
caggcaataaggcttctggtggagacatatcttctcagcaggtgcggcgaaggggaatat
atactcggccggcagccattgaagacccttcgcctgtctaaggaagcccggcagagactt
ctggcggatttcaagtcgctatctttagataagtcaaggttaaacaggcagtggcagcga
tggctcgaaggtgcggaccaggtttgcaggttaacctttgacggtgaatgcgcttctgac
aacagagaagctcaatttataatgccgcttcatccgctggtaaaacaggctgtcatgatt
gttgatacaaagaaaatgtcatgcttaacggtcagggtatcaacagatattacccaaccg
ggtgagtacagattcatgatatttacctgggcaaaacagggctttgttcaagatatggag
cttatagctgtttgcgaagatcctgatttagaagagaatttattcgctttgctgcaggag
actgtggattatgaatacagcggcacggtctcgaaggacgattattcagatgtagaaaag
agacactacacactatggaagaatgcaaacaaagagcataaacaaaaaactatagaagtt
tgcaatattaaactagacagccttagaacaagtcataacgcaaaatcagctgttctgcaa
agccaactggattctgctgataacgaaaagataagacgaatgaaacaaagccagcttgaa
aatacagaggctgcttaccagcggcggaaatcaaaaatcgaagaggctaaggaaaaagcc
gatatacatacagaacctgttgcttatggaataattaagatagggcattag
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