Limihaloglobus sulfuriphilus: SMSP2_01182
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Entry
SMSP2_01182 CDS
T04749
Symbol
hrdB
Name
(GenBank) RNA polymerase principal sigma factor HrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
pbas
Limihaloglobus sulfuriphilus
Pathway
pbas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbas00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SMSP2_01182 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbas03021
]
SMSP2_01182 (hrdB)
Transcription machinery [BR:
pbas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SMSP2_01182 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
HTH_23
HTH_28
HTH_7
HTH_29
HTH_Tnp_1
MMR_HSR1_Xtn
HTH_38
Mor
HTH_17
Xre-MbcA-ParS_M
WH_Egal
MerR_1
HTH_58
Motif
Other DBs
NCBI-ProteinID:
AQQ70820
UniProt:
A0A1Q2MDS2
LinkDB
All DBs
Position
complement(1507683..1509368)
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AA seq
561 aa
AA seq
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MAKIVNKCIKQLLKDVRFAPKNTKLRQLVSAENFIDTIDKNRSYPFDFVCYKITGFRYHE
DEFSEDVLTGSDLYTDLLGFVLSLSSQISIPVKEVSEKVYTVVELAGKFKVARKTIDRWR
RQGLVSRTYIYEDSRRRVGVRESDMKKFISRHPEMFRRASKFSRMNDHEKRQIISLAKDM
AAEDHQNRKEIIDLIAAKVSRSCETVRYTLEAYEKQNGTESVFSKPFGSIDPETAASIHT
AFSSGESVEKLAQEHNRSTSSIYRILNQVKARDIKNHNFSYVYNPDFDNRNKVDSILAAK
ISFDSDTMPGTVSSEHEMQEYINIINNMPVLNADLEIAAFTKYNCLKYLCSKIQDKISIS
NPKSSYIAQFEDYLKEAERIQNFIIECNLRIVVNTALRYANKGYSFYDLISEGNLALIRA
VEKYDCVYSHRFASFANLYIQKVFAAKLSKEWRRKDKPKGFDLAGIAVSTEMSPLKKLGD
DEKKSYNLETVIKNNLTNTESYIIRNHYGITGSLLPFKPKTIKTISEELGIGRDKVKLHE
LKALQKLRHCLSKEEYELFER
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagatagtcaacaaatgtataaaacagcttctaaaggacgtaagattcgctcct
aaaaacactaagctcaggcagctggtttcggctgaaaattttattgatactatcgataag
aatagaagttatccttttgattttgtatgttataaaataacaggctttcgttatcatgag
gatgaattttctgaagatgttttaactggttcagatttatataccgatttacttggtttt
gtattaagtctcagctcacagatatcgattcctgtaaaggaagtttcagaaaaggtttac
acagtagttgagcttgcgggaaaattcaaagtcgcgaggaagaccatagaccgctggcgc
cggcagggactggtatcccgaacctatatttatgaggattcccgccgccgcgtgggcgta
cgcgagtcagatatgaagaaattcatatccaggcaccccgaaatgttcaggcgggcctca
aagttcagccgaatgaatgaccatgaaaagaggcagattatctctttagcaaaagatatg
gcggcggaagatcatcaaaaccgcaaagagataatcgatttgattgccgcaaaggtttcc
cgctcctgcgaaacagtccgctacactctcgaggcgtatgaaaagcaaaatggaaccgaa
agtgttttcagcaaaccctttggatcgatagaccctgaaaccgcagcatcaatacacacc
gctttcagttccggagagtctgtcgaaaaactcgctcaagaacataatcgcagtacaagc
tcaatatacaggatactcaaccaggtaaaggcaagggatatcaagaatcataatttcagc
tatgtttacaaccctgactttgacaacagaaacaaagtcgattccatattagccgcgaag
ataagttttgattcggatacaatgccgggtactgtatcgagtgagcatgagatgcaggag
tatatcaacattataaacaatatgccggtattaaacgctgatctggagattgccgctttt
acaaaatacaattgcctgaagtatttgtgttccaaaattcaagataagatctcaatatca
aacccaaagtcatcatatattgctcaatttgaagattatttgaaagaagcggagaggatt
cagaactttataatagagtgcaacctgagaatagttgtcaatacagcccttaggtatgcc
aataaagggtattcgttttatgaccttataagcgagggtaaccttgctttgatacgtgct
gttgaaaaatatgactgcgtttacagccacagattcgcgagctttgccaatctgtatatc
cagaaggtctttgccgcgaaactctctaaggagtggcgccgtaaagacaagcccaaaggc
tttgatcttgccggtattgcagtcagtactgagatgagtccgttaaaaaaacttggcgat
gatgagaaaaagtcttataatcttgaaacggtgataaaaaacaatcttactaatacagag
agttatattattcgcaatcactacggcatcacaggaagtttgctgccgtttaaaccaaaa
accattaaaactatcagcgaagagcttggaataggcagagacaaggttaagctgcacgag
ttaaaagctctgcaaaagctgcggcactgtcttagcaaggaagaatatgagctttttgag
agataa
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