Limihaloglobus sulfuriphilus: SMSP2_02338
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Entry
SMSP2_02338 CDS
T04749
Symbol
rpoA_1
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pbas
Limihaloglobus sulfuriphilus
Pathway
pbas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMSP2_02338 (rpoA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbas03021
]
SMSP2_02338 (rpoA_1)
03400 DNA repair and recombination proteins [BR:
pbas03400
]
SMSP2_02338 (rpoA_1)
Enzymes [BR:
pbas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMSP2_02338 (rpoA_1)
Transcription machinery [BR:
pbas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMSP2_02338 (rpoA_1)
DNA repair and recombination proteins [BR:
pbas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMSP2_02338 (rpoA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_8
TPR_17
TPR_19
TPR_1
TPR_12
TPR_16
TPR_14
TPR_11
TPR_CcmH_CycH
TPR_7
TPR_Slam
ARM_TT21_5th
TPR_6
ANAPC3
NatA_aux_su
TPR_10
ARM_TT21
ARM_TT21_C
ARM_TT21_N
HAT_PRP39_C
ARM_TT21_2nd
TPR_NPHP3
PknG_TPR
FAT
TPR_15
HEAT_Nup120
DUF6584
HemY_N
SAM_EPH
TPR-S
DUF5113
TPR_21
DUF3856
I_LWEQ
Motif
Other DBs
NCBI-ProteinID:
AQQ71959
UniProt:
A0A1Q2MH31
LinkDB
All DBs
Position
2998205..2999509
Genome browser
AA seq
434 aa
AA seq
DB search
MTSSFATEIDIFSGDVPDFEQIDKLISSVNSSELNRERFRKDLEANEDSAKNIAMGLGYF
VTGDYAAAQEKLSSAAESAQKHYYLGLIYKKQHRYDNAVKEFNKAMKNNADTNRVDLQKV
DILRLEGKFKEAREKLGTCRQLQGTADYYHALGCIQNSEGNYEEALATFQKALEADENHV
KSMFDMALLIDLRGDEEEAINLYRKIVEMTPANVNALLNLAVLYEDKGEFQKAGDCVNLV
NKLHPNHQRAIMYLRDVESSKVMEVDEEREKLKDRRTQILETPITDFELSVRSRNCLRKM
NIFTIGDLMRITEAELLSYKNFGETSLTEIRAMLESKGLRLGMHADGSGEELPEPMELDD
EVEYDSDLLSKTVDELELSVRARRAVDRLKIRTLGELVSKTEAELLACKNFGITSLTEIK
ERLMKFGLNLRRIE
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgacatcttcttttgcaaccgaaattgatattttcagcggcgatgtgccggattttgaa
cagattgacaagctgataagcagtgtaaactcaagcgagctgaacagggagcgtttcagg
aaagaccttgaggcaaacgaagactcggcaaagaatattgccatgggtctgggctatttt
gtcactggcgactatgccgcggcacaggaaaagctctcatcagccgctgaaagcgcgcaa
aagcattactaccttggccttatatataaaaaacaacaccgctacgataatgctgtcaag
gaattcaacaaggcgatgaagaacaacgccgacacaaacagggttgacctgcaaaaagta
gatatcctgcgtcttgaaggcaaattcaaagaggcacgcgaaaagctcgggacctgccgc
cagctgcagggcaccgcggactactatcacgccctgggctgcatccagaactctgagggc
aattacgaagaagccctggcaacattccaaaaggccctcgaggccgacgaaaaccacgtt
aagtctatgtttgatatggctttgctgatagacctccgcggcgatgaggaagaagcgata
aacctctaccgcaagatagtcgaaatgaccccggctaacgtgaacgcacttcttaacctc
gcggtactctacgaggacaagggcgagttccagaaagccggcgattgtgtgaatctggtc
aacaaactgcacccgaaccaccagcgggctatcatgtatctgcgtgatgttgaaagctct
aaggtaatggaggttgacgaggaacgcgaaaaactcaaagaccgccgcacccagatactc
gagactccgatcaccgatttcgagctgtctgtcagaagccgcaactgcctgcgtaagatg
aacatatttaccatcggcgatttgatgcgaatcaccgaagccgagctgctatcgtataag
aactttggcgaaacatcactgaccgagatccgtgcgatgcttgaatccaaaggccttcgc
ctcggtatgcacgctgacggctccggcgaggaactgcccgagccgatggaacttgatgac
gaggtcgagtatgacagcgacctgctgagcaaaacggttgacgagcttgaactttccgtt
cgtgcccgccgtgccgttgacaggctcaaaatcagaacgctcggcgagcttgtcagcaaa
accgaggccgaactgctggcatgtaagaactttggcattacaagccttaccgagataaag
gaaaggctgatgaaattcggccttaaccttagaagaatcgaataa
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