Polaribacter batillariae: JL193_08670
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Entry
JL193_08670 CDS
T08207
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbat
Polaribacter batillariae
Pathway
pbat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL193_08670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbat03019
]
JL193_08670
Enzymes [BR:
pbat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JL193_08670
Messenger RNA biogenesis [BR:
pbat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JL193_08670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTD36240
LinkDB
All DBs
Position
2020532..2021869
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AA seq
445 aa
AA seq
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MTFKDLGLSASLVKAVEEKGYTQPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVL
QYLAETKHPKYRPLRALVLTPTRELAAQVYDNVREYSKYVNIKSAVVFGGVKAKPQIATL
KNGVDILVATPGRLLDLHDQKAVSFKRVDVLILDEADRMLDMGFVRDINKIISFMPEKRQ
NLLFSATFSNDIKKLAAGILKNPVSVETAPQNSTAKKVTHKVYKVDKKQKTALAIKLIKD
NNWSQVLVFTRTKHGANKLTEKFIKAGISAAAIHGNKSQGARTKALRNFKDNSIKILVAT
DIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGAAGEAISFVCSEETEYQKEIEK
ILNEKLNSLVLEGFEPTDTAPPKRAATQSKGSFGKKKKQQFSNGGANKKTDPKTSAARKR
KPHFKGNKPASSVRGRTGAPKKKRY
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagacttaggtttgtctgcatcattggtaaaagcagttgaagagaaagga
tacacccaaccatcacctatacaagaaaaagcaattccgcatattttagaaggcaaagat
attttagcttctgcacaaacaggaacaggaaaaacagcaggttttaccttgcctgtttta
caatatttagcagaaacaaaacatcctaaatacagaccgttaagagctttggttttaaca
ccaacaagagaattagcggcacaggtttacgataatgtaagagaatacagtaaatatgta
aatataaaatctgctgtagtttttggtggtgtaaaagccaaaccacaaattgcaacatta
aaaaacggtgtagatattttagtagccacaccaggtagattactagatttacacgaccaa
aaagccgtttcttttaaacgagttgatgtgttaatcttagatgaagcagacagaatgtta
gacatgggttttgttagagacattaacaaaattattagttttatgccagaaaagcgtcag
aatttactgttttctgccacattttctaacgatattaaaaaactagccgctggtatttta
aaaaacccggtttctgtggaaactgctccgcaaaactcaacagctaaaaaagtaacacac
aaggtttataaagttgataaaaagcaaaaaactgcgttagctattaagctgataaaagat
aacaattggagtcaggttttggtgtttacaagaacaaaacacggtgctaataaattaact
gagaaatttattaaagcaggaatttctgcagccgccattcacggaaataaaagtcaaggt
gcaagaacgaaagcgctgcgaaattttaaagacaattctattaaaattttagtagccaca
gatattgctgctcgtggtttagatattcctttattgcctcatgtaattaattttgaattg
ccaaatgtaccagaagattatgtacatagaattggtagaacaggaagagctggtgctgct
ggagaagcaatttcttttgtttgtagtgaagaaaccgagtaccaaaaagaaattgaaaaa
atattaaatgagaaattaaattcgttggttttagaaggttttgaacctacagatactgcc
ccacccaaaagagctgcaactcaaagcaaaggttcttttggtaaaaagaaaaagcaacag
ttttctaatggaggtgctaataaaaaaacagatcctaaaacaagtgcagcacgaaaaaga
aaaccacattttaaaggcaataaacctgcaagttctgttcgtggaagaactggcgctcct
aaaaagaagcgttattaa
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