Polaribacter batillariae: JL193_15960
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Entry
JL193_15960 CDS
T08207
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pbat
Polaribacter batillariae
Pathway
pbat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL193_15960 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbat03019
]
JL193_15960 (rny)
Messenger RNA biogenesis [BR:
pbat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JL193_15960 (rny)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
YtxH
DUF5308
Motif
Other DBs
NCBI-ProteinID:
QTD37547
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Position
3627655..3629220
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AA seq
521 aa
AA seq
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MDGMLFPIIVGIIGIAIGFIVAKLIEKSKGKKLLNATRKEANSILKEAKVDAESIKKEKI
LQAKEKFIELKSEHEKVILSREKKISDIEKRIRDRESQVASELDKNKKLNRALEQKEKDY
NFKLDFLEKKEGDLEKMHKRHVDMLEQISGLSADEAKKELVSSLKDEAKAEAMAFIQTSI
EEAKLTAEQEARKVVLGTIQRVGVEQAVENCVSVFNLESDDVKGRIIGREGRNIRAIEAA
TGVEIIVDDTPDAIILSCFDPIRREIARLSLHKLVTDGRIHPARIEEVVGKTEKQITQEI
IEVGKRTVIDLGIHGLHPELVKAVGRMKYRSSYGQNLLQHSREVANLCGIMAAEMGLNSK
VAKRAGLLHDIGKVPNEESELPHALLGMQWAEKYGEKPDVCNAIGAHHDEIEMKSLISPI
VQVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFTGVQKAYAIQAGRELRVMVESTKV
NDTKAAELSFNISQKIQNDMTYPGQVKVTVIRETRAVNVAR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggacggaatgttatttcccattattgtgggaattataggaattgcaattggttttatc
gttgcaaaattgatagagaaatctaaaggtaaaaaattattaaatgcaacaagaaaagaa
gcaaattctattcttaaagaagccaaagtagatgccgaatcaataaaaaaagaaaagatt
ttacaggcgaaagaaaaatttatcgaactaaagtccgaacacgaaaaagttatactatca
agagaaaagaaaatttctgatatcgaaaaacgaattagagatagagaatcgcaagtagca
tcggaacttgataaaaacaaaaaattaaatcgcgccttagaacaaaaagaaaaagattat
aattttaaattagactttttagaaaaaaaagaaggagatttagaaaaaatgcacaaacgt
catgtagatatgttagagcaaatttctggattatctgcagacgaagctaaaaaagaactc
gtttcttctttaaaagatgaagccaaagcagaagcaatggcttttatacaaacctctatt
gaagaagcaaaattaacagcagaacaagaagcaagaaaagttgttttaggaaccatacaa
agagtaggtgtagaacaagctgtagaaaactgtgtttctgtttttaacttagagtcagat
gacgtaaaaggaagaattattggtagagaaggaagaaatattagagcaattgaagctgca
actggtgtagaaattattgttgacgatactccagatgccattatactttcttgtttcgac
ccaattcgaagagaaatagcacgtttatctttgcataaattggttacagacggtagaatt
cacccagcaagaatcgaagaagttgttggtaaaacagaaaaacaaattacccaagaaatt
atagaagttggtaaaagaacggttatcgatttaggaatccacggcttacacccagaattg
gtaaaagcggttggtagaatgaagtatagatcttcttacggtcaaaatttattacaacac
tcacgtgaagtggcaaatttgtgcggaattatggccgcagaaatgggcttaaactctaaa
gttgcaaaacgtgcaggcttattgcacgatattggtaaagtaccaaatgaagaaagcgaa
ttaccacatgcattattaggaatgcagtgggcagagaaatatggcgaaaagccagatgtt
tgtaacgcaattggtgcacaccatgacgaaattgaaatgaaaagtttaatttctccaatc
gtacaagtttgtgatgcaatttctggagcaagacctggagcaagacgtcaagttttagat
tcttacattcagcgtttaaaagatttagaagatattgcatttgggtttacaggagtgcaa
aaagcctatgctatacaagcaggtcgtgaattgcgtgttatggtagaaagcacaaaagta
aacgacacaaaagctgctgaattatcatttaatatttctcagaaaattcaaaatgacatg
acgtatcctggtcaagtaaaagttacagttattcgtgagactagagctgttaatgtggcg
agatag
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