Polaribacter batillariae: JL193_16210
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Entry
JL193_16210 CDS
T08207
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbat
Polaribacter batillariae
Pathway
pbat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL193_16210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbat03019
]
JL193_16210
03400 DNA repair and recombination proteins [BR:
pbat03400
]
JL193_16210
Enzymes [BR:
pbat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JL193_16210
Messenger RNA biogenesis [BR:
pbat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JL193_16210
DNA repair and recombination proteins [BR:
pbat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JL193_16210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
QTD37589
LinkDB
All DBs
Position
3678441..3680624
Genome browser
AA seq
727 aa
AA seq
DB search
MDLHGPLKKFFGFSKFKGLQEQVIKSIVNNENTFVIMPTGGGKSLCYQLPALMKEGTAIV
VSPLIALMKNQVDAIRGISENDGVAHVLNSSLNKSEVNQVKEDIANGITKLLYVAPESLI
KEEYVTFLRTQKISFVAIDEAHCISEWGHDFRPEYRNLKHIIKAIDNVPVICLTATATEK
VQEDILKTLGITDANRFKASFNRANLFYEVRPKTSDVEKDIIRFVKQRMGKSGIIYCLSR
KKVEEIAQILQVNGINAVPYHAGLDAKTRVKHQDMFLMEDCDVVVATIAFGMGIDKPDVR
YVIHHDIPKSLESYYQETGRAGRDDGEGYCLAFYAYKDIEKLEKFMASKPVAEQEIGHAL
LQEVVGYAETSMSRRKYLLHYFGEEFDEINGEGADMDDNSRNPKKKHEAKDDVVKILSVV
RDTFQKYKAKEIVNTIIGKENALLTSHKTHLQPFFGIGKDKSAAYWMALIRQILVVNFIR
KEIEQYGVIKLQEKGEEFLRKPTSFMMTEDHTYSAENDNTIVTNAKSSGIAADQKLIKIL
KDLRKKVASKTGVPPFAIFQDPSLEDMALKYPITLEELSKVHGVGEGKARKFGKEFIKLI
SDYVDENDILRPDDLIVKSTGVNSGLKLYIIQNTDRKLPLEDIAKSKGKEMSDLIKEMEA
IIYSGTKLNIDYALDDLLDEEQQEEIHEYFMEAESDSIQDALDEFDGDYDEEELRLMRIK
FINEVGN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggatttacatggtcctttaaaaaagttttttggttttagtaaatttaaaggtttacaa
gaacaggttataaaaagtattgtaaataacgagaatacctttgttattatgcctactgga
ggtggtaaatctctttgttaccaattgccagcattaatgaaagaaggaacagccattgtg
gtttcgcctttaattgcattgatgaaaaatcaggtagatgccataagaggcatttctgag
aatgatggtgttgcacacgtattaaactcatctttaaacaaaagtgaggtaaatcaggta
aaagaagacattgctaatggcattacaaagttgctatatgtggctccagagtctttaata
aaagaagaatatgtaacttttttacgtactcaaaaaatttcttttgttgcgattgatgaa
gcacattgtatttctgaatgggggcacgattttagaccagaatataggaatctgaaacat
attattaaggccatagacaatgttcctgtaatttgtttaaccgcaactgctacagaaaaa
gtacaagaagatattttaaaaacgttaggcattacagatgccaatcgatttaaagcgtct
tttaatagagcgaatttgttttatgaagtgcgcccaaaaacatctgacgtagaaaaagat
attatccgttttgtaaaacaacgcatgggcaaatctggtattatttattgtttaagtaga
aaaaaggtagaagaaattgcacaaattttacaagtaaacggaattaatgcagtgccttat
catgcaggtttagatgcgaaaacaagagtaaagcaccaagatatgtttttaatggaagat
tgcgatgttgtagttgcaacgattgcatttggtatgggaattgacaaaccagatgtgcgt
tatgtaattcatcatgacattcctaaaagtttagaaagctactatcaagaaacaggaaga
gcaggacgtgatgatggtgaaggatattgtttggctttttatgcctataaagatatcgaa
aaattagaaaaatttatggcgagtaaacctgttgcagaacaggaaattgggcacgcttta
ttgcaagaagtagttggttatgcagaaacttctatgagcaggcgtaaatatttgctgcac
tattttggtgaagaattcgacgaaattaatggagaaggagcagatatggacgataattct
agaaacccaaagaaaaaacacgaagctaaagacgatgttgttaaaatattatctgtggtt
agagatacgtttcaaaaatacaaagcaaaagaaattgtaaatacaattattggaaaagaa
aatgccttgttaacctcgcataaaacccatttgcaacccttttttggcattggaaaagac
aaatctgctgcttattggatggcattaattcgccagattttggtagtgaattttattcgt
aaagaaatagaacaatacggagtgataaaattacaggaaaaaggagaggagtttttaaga
aaaccaacttcttttatgatgacagaagaccatacttattctgcagaaaacgacaatacc
attgttaccaacgcaaaatcttctggaattgcagccgaccaaaaactaattaaaatatta
aaagatttaagaaaaaaagtagcttctaaaactggtgttccgccttttgccatttttcaa
gacccatctttagaagatatggctttaaaatatccaataactttagaagaactatctaaa
gtccatggagtaggagaaggaaaagcaagaaaatttgggaaggaatttataaaattaatt
tcagattatgtagatgaaaacgatattttaagaccagacgatttaattgtaaaaagtaca
ggagtaaattctggattgaagctatacatcattcaaaatacagatagaaaattgccttta
gaagacattgcaaagtcgaaaggaaaagaaatgagtgatttgattaaagaaatggaagca
attatttattctggaaccaaattaaatatcgattatgccttggatgatttgttggatgaa
gaacaacaagaagagattcacgaatattttatggaggcagagtccgacagcattcaagat
gctctcgacgaatttgatggagattacgacgaagaagagttgcgtttaatgcgaattaaa
tttattaatgaagtagggaattaa
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