Polaribacter batillariae: JL193_16735
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Entry
JL193_16735 CDS
T08207
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbat
Polaribacter batillariae
Pathway
pbat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL193_16735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbat03019
]
JL193_16735
Enzymes [BR:
pbat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JL193_16735
Messenger RNA biogenesis [BR:
pbat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JL193_16735
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QTD37684
UniProt:
A0ABX7SVI3
LinkDB
All DBs
Position
complement(3815135..3816370)
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AA seq
411 aa
AA seq
DB search
MQFSEIPLDKSILKAVAEARFHTPTLVQQQTIPLVLEKKNVIVSANTGTGKTAAFALPII
HLLINNENKEVEKKKIKSLIITPTRELAIQIFENFNSFSKYTNLKTTAVYGGVSLEPQKE
ILAKGVDILIATPGRLIDLQMQGNIDLNSVEIFVLDEADLMLDMGFIKDIKKIEALCPKN
KQTLLFSATIPDSITELAYKILKNPIKVAINPEETTAKNIGQLLYYLPKKNKTDLCLHLL
RNTINGSIIIFKRTKFGVDKLEQTLLKNGYKVASIHGDKTQAVRNKAIEEFKNKKAHLLI
ATDVAARGIDITNVDAIINFDIPNVAETYIHRIGRTGRAGKSGIAFSFCSPDENGYIKLI
EALIEKPIKVVTEHPYVINKAKNTKKQPNTISKNKKGRKSKASKKKKKRWY
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctgaaattccacttgataaatctatcttaaaagcagttgctgaagcacgt
tttcatacaccaactttagtacaacaacaaaccattcctttagttttagaaaagaaaaat
gtaattgtttctgcaaatacaggaacaggaaaaacagctgcttttgccttgcccattatt
catttattaataaataatgaaaataaagaagtggaaaaaaagaaaataaaatcgcttatt
attactccaactcgtgaattggccattcaaattttcgagaattttaatagttttagcaaa
tacacaaaccttaaaaccacagcagtttatggaggcgtttctttagaacctcaaaaagaa
attttagcgaaaggtgtagatattttaattgcaactccaggaagattaatcgacttgcaa
atgcaaggaaatattgatttaaactcggttgaaatttttgttttagatgaagccgattta
atgttagacatgggtttcatcaaagacatcaaaaaaatagaagcgttatgcccaaaaaac
aaacaaacgttacttttctctgctacaattccagattcaattacagaattagcctataaa
atccttaaaaaccctataaaagtagccataaatccagaagaaaccacagccaaaaatatt
ggtcagcttttgtattatcttcctaaaaaaaataagacagatttgtgtttgcatttgtta
agaaacacgataaatggaagcattattatatttaaacgtacaaaatttggcgttgataaa
ttagaacaaaccttacttaaaaatggctataaagttgctagtattcatggagacaaaaca
caagctgttagaaacaaagccattgaagaatttaaaaataaaaaagcacatcttttaatt
gcgacagatgttgctgcacgcggaattgacattacaaatgtagatgccattattaatttc
gacattccgaatgttgcagaaacctatatccacagaattggaagaactggtagagcagga
aaatctggcattgcattctctttttgttcgccagatgaaaacggatatattaaattaatt
gaagctttaatcgaaaaacctattaaagttgttacagaacatccttatgtaattaacaaa
gctaaaaacaccaaaaaacagccaaataccatcagcaaaaataaaaaagggagaaaatct
aaagcttctaaaaagaagaaaaaacgctggtattaa
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