Pseudomonadaceae bacterium T75: OS670_00855
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Entry
OS670_00855 CDS
T08742
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbau
Pseudomonadaceae bacterium T75
Pathway
pbau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OS670_00855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbau03019
]
OS670_00855
03009 Ribosome biogenesis [BR:
pbau03009
]
OS670_00855
Enzymes [BR:
pbau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OS670_00855
Messenger RNA biogenesis [BR:
pbau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OS670_00855
Ribosome biogenesis [BR:
pbau03009
]
Prokaryotic type
rRNA helicases
OS670_00855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
HEM4
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
WAD26903
LinkDB
All DBs
Position
161467..163128
Genome browser
AA seq
553 aa
AA seq
DB search
MTQEIGGFAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAF
ALPILSKIDPARREPQALILAPTRELALQVATAFETYSKQMPGVGVVAIYGGAPMGPQLK
AIRQGAQIIVATPGRLVDHLSRNSALLSTIQFLVLDEADEMLKLGFMDDLEVIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIPAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTNQKVAEVRLPNAQQVLDARIKKLTNGLAPLVADAEASHGGLLDKLIADIGCSPRAL
AAALLRKATNGQALTLAEVEKEQPLVPTSGPRERSDRPERSGDRERRAPMPLAEGRARCR
TPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLERLLGKLKDTRV
GGKQLKLRRYRED
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggctttgccgcactcggtattcactccgccgtactggctgcc
atcagcgcagtcggctacgaagaaccatcccccattcaggcccaggcgatcccggtgatc
ctcggcggccacgacatgatcggccaggcgcagaccggtaccggcaagaccgcggccttc
gcgctgccgatcctgtcgaagatcgacccggcccgtcgcgagccgcaggcgctgattctc
gcgccgacccgcgagctggccctgcaggtcgccaccgcgttcgaaacctattccaagcag
atgcccggcgtcggcgtcgtcgccatctatggtggcgcaccgatgggcccgcagctcaag
gccatccgccagggcgcgcagatcatcgtcgcgacccccggccgtctggtcgatcacctg
agccgcaacagcgcactgctgtcgaccatccagttcctggtactcgacgaagccgacgag
atgctcaagctgggcttcatggacgatctggaagtgatcttcgaagccatgccggaaagc
cgtcagagcgtgctgttctccgccacgctgccgcactcgatccgcgccatcgccgagaag
cacctgcgcgagccgcagcacatcaagatcgccgccaagacccagaccgtggcgcgcatc
gagcaggcacacctgatggtccatgccgaccagaagatcccggccgtgctacgcctgctg
gaagtcgaggatttcgacgcgctgatcgccttcgtgcgtaccaagcaggccaccctggat
ctggccgccgcgctggaggccaaaggctacaaggccgccgcgttgaatggcgacatcgcc
cagaaccagcgtgagcgcgtcatcgaatcgctcaaggacggccgcctggacatcgtcgtg
gccaccgacgtcgctgcccgcggcctggacgtggcgcgcatcactcacgtattcaacgtg
gacatgccctatgatcccgagtcctacgtgcaccgcattggtcgtaccggccgcgccggc
cgcgatggccgcgcgctgctgctggtcaccccgcgtgagcgccgcatgctgcaggtcatc
gagcgcgtgaccaaccagaaggtcgccgaagtgcgcctgcccaacgcccagcaggtgctg
gatgcacgtatcaagaaactcaccaacggcctcgcgccgctggtggccgatgccgaagcc
agccatggcgggctgctcgacaagctgattgccgatatcggttgcagcccgcgtgccttg
gccgctgcgctgctgcgcaaggctaccaacggtcaggcgcttactctggccgaagtggaa
aaggaacagccgctggtaccaaccagtggtccgcgtgagcgttccgatcgtccagagcgc
agcggtgatcgcgagcgccgtgcgccgatgccgctggccgaaggccgcgcccgctgccgt
accccgctgggtgcgcgcgacggcattgccgcgcgtaacctgctcggtgccatcctcaac
gaaggcggcctggcccgcgaagccatcggtcgcatccaggtgcgcgacagcttcagcctc
gtcgaactgcccgaagaaggcctcgagcgcctgctgggcaagctcaaggacacccgtgtc
ggcggcaagcagttgaaactgcgtcgctatcgcgaggactga
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