Pseudomonadaceae bacterium T75: OS670_15450
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Entry
OS670_15450 CDS
T08742
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbau
Pseudomonadaceae bacterium T75
Pathway
pbau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OS670_15450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbau03021
]
OS670_15450 (rpoC)
03400 DNA repair and recombination proteins [BR:
pbau03400
]
OS670_15450 (rpoC)
Enzymes [BR:
pbau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OS670_15450 (rpoC)
Transcription machinery [BR:
pbau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OS670_15450 (rpoC)
DNA repair and recombination proteins [BR:
pbau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OS670_15450 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
DUF3150
PPDFL
Motif
Other DBs
NCBI-ProteinID:
WAD25795
LinkDB
All DBs
Position
3322319..3326518
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHEIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFHGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETVKGRDDSITKNTRIVDTTVGRALLFQIVPEGMSFDVVNQPMKKKA
ISKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKAHIIGAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRDGKEAEQDSFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLHMTPHIEGGDVVEPLGERVL
GRVIARDVLKPGTEEVLVPAGTLIDEKWVDFIELNSVDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVLVKNGGTIRL
HNLKHVERADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDGGAVVAKW
DPHTHPIVTEMKGVVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAEINVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGTDPYEELIPKWRHLNVFE
GEQVNKGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLEENERLGEEDKFVAKYVRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLQYHSERKRKRDADKPVR
VSADEVEAALTEALNSSSN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctgctgaatctattgaaaaaccagggtcaaatcgaagagttcgatgccatc
aagattgcgctggcatcgcccgagatgattcgttcctggtccttcggtgaagtgaagaaa
ccggagaccatcaactaccgtacgttcaagcccgagcgtgaaggtctgttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgcggcgtgatctgcgagaagtgtggcgtcgaagtcgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgtgacatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgatccaggcatgaccacgctcgagaaaggccaactgctg
aacgacgagcagtacttcgaggcgctcgaagagttcggtgacgacttcgatgcccgcatg
ggcgccgaggccgtgcgcgagctgctgcacgaaatcgacctggagcacgagatcggtcgc
ctgcgtgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccatggctcgggcaacctgcccgagtggatggtgctgacc
gttctgccggttctgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcgacctcagatctcaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctcaag
cgtctgctggacctggccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagccgtcgacgccctgctggacaacggccgtcgcggccgtgccatcaccggttcgaac
aagcgcccgctgaagtccctggccgacatgatcaagggcaagcagggccgcttccgtcag
aacctgctcggcaagcgcgtcgactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgcggcctgccgaagaagatggctctcgagctgttcaagccgttc
atcttcggcaagctagaaatgcgcggcatggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgcccgaggtgtgggacgttctcgccgaagtgattcgcgaacatccc
gtgctgctcaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccggtg
ctcatcgaaggcaaggcgatccagctgcatccgctggtgtgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtccacgttccgctgaccctcgaggcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcgagccgattatc
gtgccgtcgcaggacgtggtgctgggtctgtactacatgacccgcgaagcgatcaacgcc
aagggcgaaggccgggtgttcgccgatctgcaggaagtcgaccgcgtgttccgcgccggc
gaggcgtcgctgcatgcgcgcgtgaaagtgcgtatcaacgagaccgtcaaagggcgtgac
gacagcatcaccaagaacacccgcatcgtcgacaccactgtcggccgtgcgctgctgttc
cagatcgttccggaaggcatgtcgttcgacgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaacctgtgctaccgcacggtgggtctgaaggacactgtcatcttc
gctgaccagctgatgtacaccggtttcgcctactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgtcatcccggatgagaaggcgcacatcatcggtgcggccaccgaggaa
gtgaaggagatcgagagccagtacgcgtccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtctccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgtgacggtaaagaagccgagcaggattcgttcaac
tcgatgtacatgatggccgactcgggcgcgcggggttctgctgcgcagattcgccagctg
gccggtatgcgtggcctgatggccaagccggatggctccatcatcgagacgccgatcacc
gcgaacttccgtgaaggcctgaacgtactgcagtacttcatttccactcacggtgcgcgt
aagggtctggcggataccgcactgaagaccgcgaactccggttacctgacgcgtcgcctg
gtcgacgtggcccaggatctggtggtgaccgagatcgactgcggtaccgaacagggtctg
cacatgacgccgcacatcgaaggcggcgacgtggtcgagccgctcggcgagcgtgtgctg
ggtcgtgtcattgctcgtgacgtcctcaagccgggcaccgaggaagtgctggtgccggcc
ggtaccctgatcgacgagaagtgggtcgatttcatcgaactcaacagcgtcgatgaagtg
atcgtgcgttctccgatcagctgtgaaacgcgctacggcatctgtgccaagtgctacggt
cgcgatctggcccgtgggcatcaggtcaacatcggcgaggccgtgggtgtcatcgcggcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gccagccggacctcggcggtcgacaacgtgctggtgaagaacggcggtaccatccgcctg
cacaacctgaagcacgtcgagcgcgccgatggcgccctggtggcggtatcgcgctccggt
gagctggcggtagcggacgacttcggtcgcgagcgcgagcgttacaagctgccgtacggt
gcggtcatttccgtgaaggaaggtgacaaggtcgatggcggggccgtcgtggccaagtgg
gatccgcacacccacccgatcgtgaccgagatgaagggtgtcgtgaccttcgtcggcatg
gaagagaacatcaccatcaagcgccagaccgacgagctgaccggtctgaccaacatcgaa
gtgatggatccgaaggaccgtccggccgccggcaaggacatccgtccggcgatcaagatg
gtcgatgccaatggcaaggaattgctgctgccgggtaccgacgtgccggcccagtacttc
ctgccggccaacgctctggtcggtgtagccgatggcgccgagatcaatgtgggtgacgtc
atcgcgcgtatcccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccggccgaaagagccgtcgatcctcgcggaaatcagc
ggcaccatctccttcggcaaggaaaccaagggcaaacgccgcctggtcatcacgccgacc
gatggcaccgatccttacgaggagctgatcccgaagtggcgtcacctgaacgtgttcgaa
ggcgagcaggtgaacaagggcgaagtcatctccgacggcccgagcaacccgcacgacatc
ctgcgcttgctgggtgtcagcgcgctggccaagtacatcgtcaacgagatccaggacgtg
taccgcctgcagggtgtgaagatcaacgacaagcacatcgagacgattcttcggcagatg
ctgcgcaaggtcgagatcagcgagtcgggcgactccagcttcatcaagggcgaccagatg
gagctgacccaggtgctggaagagaacgagcgcctgggcgaagaggacaagttcgttgcc
aagtacgttcgcgtgctgctgggcatcaccaaggcctcgctgtccaccgagtcgttcatc
tctgcggcctccttccaggagactactcgcgtcctgacggaagcggcggtgaccggcaag
cgcgactatctgcgcggcctgaaggaaaacgtggtggtgggtcgcctgatcccggccggt
accggtctgcaatatcacagcgagcgcaagcgcaagcgtgatgcggacaagccggtacga
gtaagtgctgatgaagtcgaggcggctcttaccgaggcgctgaactccagcagcaactaa
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integrated database retrieval system
