Pseudomonadaceae bacterium T75: OS670_19375
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Entry
OS670_19375 CDS
T08742
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbau
Pseudomonadaceae bacterium T75
Pathway
pbau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OS670_19375 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbau03019
]
OS670_19375 (rne)
03009 Ribosome biogenesis [BR:
pbau03009
]
OS670_19375 (rne)
Enzymes [BR:
pbau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OS670_19375 (rne)
Messenger RNA biogenesis [BR:
pbau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OS670_19375 (rne)
Ribosome biogenesis [BR:
pbau03009
]
Prokaryotic type
rRNA processing factors
OS670_19375 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WAD26535
LinkDB
All DBs
Position
complement(4148694..4151780)
Genome browser
AA seq
1028 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDF
GSDRHGFLPLKEISREYFKKTPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNIPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWSAVKEASAERQAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQNEALS
FIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSLVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKM
REALEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPEIMAGQASYEMSQTEAEDAQPAASTRTLVRQEAAVKTAPHRTAPAPTPAP
TASSAAPAAQEPSLFKGLVKSLVGLFAGKAEEPTAEVEKKTSSSSRAPRNDERRSGRQQN
RRRDTRGARDEERKPREERAPRAERQPREERAPREERQPRQREERKPREQLETNDTQPQA
RRERAPREERQPREERKRELRAPLDEVVDNVQAPSEESVERKPRQPREERKPRNEQNLNE
EVQQTEEAAENAQNEQDAAEGGDRPRRRSRGQRRRSNRRDRQRDANGNEIEGENDAEEVA
NAVSESNAPVKSEQVAIAATAAALAANTADTEPATKAPVVEAEPAVQAPTETIEEAVTAA
PAEQAKLEAAAEEPAAAIPAAQAPVQEPAPNEPATEAVVAPVVATAEPAVVEPAPVAPAQ
PAAPAPGLTPSGRAPNDPREVRRRRREEERLAKEAAEAEAKAAAAVTEAPAEVAQPLASP
EIVAGEPAASHTPIEQPLENNPAASLEEPSAAQTEEQLSEAAAATVQTEPTASQEPEVKA
DDEENRQR
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcctgaagagttgcgtgtcgcactggtcgat
ggtcaacgcctgttcgatctcgatatcgagtccggcgctcgcgagcagaagaaagccaac
atctacaaaggcaagatcactcgcgtcgaacccagcctggaagcggccttcgtcgatttc
ggctccgaccgtcacggcttcctccccctcaaggaaatttcccgcgaatacttcaagaag
acacccgaaggtcgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagagcgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggccgttacctggtgctgatgcccaacaaccctcgtgccggtggcatttcgcggcgc
atcgaaggcgaggagcgcaacgaactgcgcgaggcgctgaacggcctgaacattcccgcc
gacatgggcctgatcgttcgcaccgccggcctgggccgttccagcgaagagatgcagtgg
gacctcgactacctgctgcagctgtggagcgcagtcaaggaagcctcggccgagcgccag
gcgcccttcctgatctaccaggaatccaatgtcatcatccgcgccattcgcgattacctg
cgccaggacatcggcgaagtcctgatcgacagcgtggaagcccagaacgaagcactgagc
ttcatccagcaggtcatgccgcagtacgccagcaagatcaagctgtacgaagacagcgta
ccgctgttcaaccgcttccagatcgagagccagatcgaaaccgccttccagcgcgaggtg
aagctgccctccggtggctccctggtcatcgacccgaccgaagccctggtctccatcgac
atcaactcggcgcgcgccaccaaaggcggcgacatcgaggaaaccgcactgcagaccaac
ctggaagccgccgaggaaatcgcgcgccagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagagaaaatg
cgtgaagcgctggaagccgaccgcgcgcgcatccaggtcggccgtatttcgcgcttcggc
ctgctggagatgtcccgtcagcgcctgcgtccgtcgctcggcgaaaccagcggcatcgtc
tgcccgcgctgtaacggccagggcatcatccgcgacgtcgagtcgctgtcgctggcgatc
ctgcgcctgatcgaggaagaagccctcaaggaccgcaccgccgaagtccgcgcccgtgtg
cccttccaagtcgccgccttcctgctcaatgaaaagcgcaacgccatcaccaagatcgaa
ctgcgcacccgcgcacggatcttcatcctgccggatgaccacctggaaacaccgcacttc
gaagtgcagcgcctgcgcgatgacagcccggaaatcatggccggccaagccagctacgag
atgagccagaccgaagccgaagacgctcagccagcggcctcgacccgcaccctggttcgt
caggaagcggccgtgaagaccgcaccacaccgcaccgcaccggcccccactcccgcgccc
actgccagcagcgcagcaccggctgcgcaggaacccagcctgttcaagggcctggtcaag
tcgctggtcggcctgttcgccggaaaggcggaagaacccaccgcggaagtcgagaagaaa
acctccagcagcagccgcgcgccgcgtaacgacgaacgccgtagcggtcgccagcagaac
cgccgccgcgatacccgaggcgctcgcgacgaggagcgcaagccgcgggaagaacgcgca
cctcgagccgaacgccagccacgtgaggaacgtgccccgcgcgaggagcgtcagccgcgt
caacgcgaagagcgcaagccacgtgagcagctcgaaacgaacgacacccagccacaagcc
cgccgtgaacgcgcaccccgcgaggagcgtcagccacgcgaagagcgcaagcgtgaactg
cgtgcgcccctcgatgaggtcgtcgataacgtacaggcgccgagcgaagaaagcgtcgag
cgcaagcctcgtcagccgcgtgaagaacgcaagccgcgcaacgagcagaacctgaacgaa
gaagtgcagcagacggaagaagcggccgagaacgctcagaacgagcaggatgcagccgaa
ggcggcgatcgtccgcgtcgccgctcgcgtggccagcgccgccgcagcaaccgtcgtgat
cgtcagcgcgatgccaatggcaacgagatcgaaggcgaaaacgatgcagaagaggtggcg
aacgcggtcagcgagagcaacgcacccgtcaagtccgagcaggtagccatcgccgcgact
gccgcggcgcttgccgccaacacggccgataccgagccagccaccaaggccccggtagtc
gaagccgagccagcggtacaggcaccgaccgagacgatcgaggaggcggtgacagcagca
ccggctgaacaggccaagcttgaagcagcggcagaagaacccgccgcagcgatcccggct
gcccaggcaccggtgcaagagccggcgccgaacgagcctgcaactgaagccgtggtggcg
ccagtggttgcaactgccgaacctgccgttgtcgagccggcgcccgtagcgccagcccaa
cctgctgctccggcaccgggactgacgccttcgggccgtgctccgaacgatccacgcgaa
gtgcgtcgccgtcgccgcgaggaagagcgcctggccaaggaagctgctgaggccgaggcc
aaggccgccgctgccgtcaccgaggcgccggccgaggtcgcgcagccgctggccagtccg
gaaatcgtcgccggcgagcctgccgccagccatacgccaatcgagcagccgctggagaac
aatccagctgccagcctggaagagccctccgctgcgcaaaccgaggaacagctcagcgag
gccgctgcagccacggtgcagaccgagccgaccgctagccaggagcccgaggtgaaggct
gacgacgaggagaatcgccagcgctga
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