Thiopseudomonas alkaliphila: AKN87_00425
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Entry
AKN87_00425 CDS
T04152
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pbb
Thiopseudomonas alkaliphila
Pathway
pbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKN87_00425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbb03019
]
AKN87_00425
03016 Transfer RNA biogenesis [BR:
pbb03016
]
AKN87_00425
Enzymes [BR:
pbb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AKN87_00425
Messenger RNA biogenesis [BR:
pbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AKN87_00425
Transfer RNA biogenesis [BR:
pbb03016
]
Prokaryotic type
tRNA degradation factors
AKN87_00425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AKX43747
LinkDB
All DBs
Position
91564..94086
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AA seq
840 aa
AA seq
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MKGEYNLKADWQTLDPEAAREAEKYENPIPSRELILQHLADRGAPANREQLCAEFGLTSE
EDIEALRRRLRAMERDAQVVYTRRGAYAPVDKLDLVLGRVSGHRDGFGFLIPDEEGEDLF
LSPTQMRLVFDGDRALARVVGVDRKGRREGAIAEVVQRAHSTLVGRYNEENGIGFVVPDN
SRMQQEILISPGRSNQAEVGQLVEVEITHWPTSRFQAQGNVTEVLGDYMAPGMEIEVALR
NYDIPHEWPKAVLAEIRKFKDQVSARDIAKRVDLRHLPLVTIDGEDARDFDDAVYCEARA
DDGRAAGGGWTLYVAIADVSHYVKLDSALDKEAQERGNSVYFPEQVIPMLPEVLSNGLCS
LNPLVDRLAIVCEVAISRAGKMLDYQFYEAVIQSQARLTYTEVSHFLERPRSAEAAQFVQ
QHAVAVEPVTQLYALYKALIKQRQVRGAIDFDTRETRIIFGDDRKIQQIVPTERNHAHRL
IEECMLCANVAMANFLQDHKLPGLYRVHDSPPEEKLEKLRGFLGTLGLELNKGKGAPTPK
DYLALLEKIQGRADFQLIQTVMLRSLSQADYRPDCLGHFGLNYEAYTHFTSPIRRYADLI
NHRAVRSVIRSRRASEHVQRVGASSLVKATIYPYDDAQLDGIGEHVSATERRADEATRDV
MNWLKCEYMLDRVGDSFAGIVTAVTGFGLFVELQDIYVEGLVHITALPGDYYQFDPLYHR
LTGERTGRSFRLGDAINVQVARVDVDERKIDFEMTEVTSASKAKTQPKRNTSVASEPAQP
SAKVRAKPAKQKIVVKDRKAVKSEVLTRKPSTKSGAKEQSGSPANDKRGVRKRPVKKQSK
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtgaatataatttgaaagccgattggcaaactctggatccagaggccgcgcgt
gaagcggaaaaatacgaaaaccctattcctagtcgggaattaattttacagcatctagct
gatcgtggtgcgccggcaaaccgtgaacagttatgcgctgagtttggtttaaccagtgaa
gaagatattgaagccttgcgccgtcgcttacgtgcgatggaacgtgatgcgcaagtggtc
tatacccgtcgtggtgcctatgcgccggtagataaattagatttagtgttgggccgagtg
agtggccaccgagatggctttggctttttaatccccgatgaagaaggggaagatttattt
ttaagccctactcagatgcgcctcgtatttgatggagatcgagcgttagcccgagtagtg
ggtgttgatcgtaaaggtcgccgagaaggggcgattgctgaagtggtgcaacgagcgcat
agtacgttggtcgggcgttataacgaagagaatggcattggctttgtagtgccagacaat
agccgcatgcagcaagaaattctgattagcccaggccgcagcaatcaagcagaggttggg
caattagttgaggtggaaattacacactggccaacctctcgattccaagctcaaggaaat
gtgactgaggtattaggcgattacatggcgccaggcatggaaattgaagtggctttgcgc
aattacgatattccacatgagtggccgaaggcggtgttggcagaaattcgtaagtttaaa
gatcaggtgagcgcgcgcgatatcgccaagcgtgtggacttgcgccatttgccgttagtg
acaattgatggtgaggatgcccgagattttgatgatgcagtgtactgtgaggcgcgtgct
gatgatggacgcgcggcaggcggtggctggactttatatgtggccattgctgatgtctcg
cattacgttaagcttgactcggcgctagataaagaggcccaggaacgaggtaactcggtc
tatttcccagagcaagtgatccctatgctgccagaggtattatctaatggcttatgctca
ctgaaccccttggtggatcgtttggcgattgtctgtgaggtggctatttcacgggccgga
aaaatgctggattatcagttctatgaagcggtgattcagtctcaggcccgcttgacctat
accgaagtgagtcatttcttggagcggccacgttctgctgaggcagcgcagtttgtgcaa
cagcatgcagtggctgtggagcctgtgacgcagctgtatgcactgtataaagcattgatt
aagcagcgtcaggtgcgtggagcgattgactttgatactcgcgaaacacgcatcattttt
ggtgatgatcggaaaattcaacaaatcgtcccgaccgagcgtaatcatgctcaccgcttg
attgaagaatgcatgctgtgtgcgaacgtggcgatggctaactttttacaagatcataag
ctgcctggcttatatcgggtgcatgatagtccgccggaggaaaagctagaaaagctccga
ggctttttaggcaccttgggtttagagcttaataaaggtaaaggggcacctacacctaaa
gattacttagcgctgcttgagaaaattcaaggccgtgcggactttcagttgatccaaact
gtgatgttgcgttcgctaagtcaggccgattatcgccccgattgcttaggccactttggc
ctaaattacgaagcttatacccactttacttcgccgattcggcgctatgcagatttaatt
aatcaccgtgcagtgcgtagtgtgatccgctcgcggcgagccagtgagcatgtgcaacgg
gtcggtgccagcagcttagttaaagccaccatttacccgtacgatgatgctcagctagac
ggtattggtgagcatgtttccgccactgagcggcgcgccgacgaggctacgcgggacgtg
atgaactggttaaaatgcgaatacatgctggatcgagtcggtgacagctttgccgggatt
gtaactgcggtgacaggctttggcttatttgttgagctgcaagatatttacgtagaagga
ttggtgcatatcaccgcgttaccgggtgattactatcagtttgatcccttgtatcaccga
ttaaccggcgagcgtacggggcgcagctttagattaggtgatgcgattaatgtgcaggta
gcacgggtggatgttgatgagcgcaagatcgactttgaaatgactgaagtaaccagcgcc
agtaaagcaaaaactcagcctaagcgtaatacatcggtggcctcagagcctgcacagcct
agtgcaaaggtacgcgctaaacctgcgaagcaaaaaatagtggtaaaagatcgtaaggcg
gtgaagtcggaagtgttaacgcgtaagccgagcactaaatctggagctaaagagcaatca
ggtagtccggctaatgacaagcgaggcgtgcgtaagcgtccggttaaaaaacagagtaag
tga
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