Thiopseudomonas alkaliphila: AKN87_00575
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Entry
AKN87_00575 CDS
T04152
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbb
Thiopseudomonas alkaliphila
Pathway
pbb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AKN87_00575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbb03400
]
AKN87_00575
Enzymes [BR:
pbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AKN87_00575
DNA repair and recombination proteins [BR:
pbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AKN87_00575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKX43772
LinkDB
All DBs
Position
complement(119970..123410)
Genome browser
AA seq
1146 aa
AA seq
DB search
MPVLPLPNISSNAGRQQWGNLRGASRALAISEAAKAAQHLTLLLTDTSQNAQLLQEELSW
FAPELPILHFPDWETLPYDVFSPHQDIISQRIASLYQLPKVKQGVLIVPINTALYRLAPT
QFLLGSSLVLNTGQTLDAEQLRHQLTEAGYQCVDTVYEHGEYAIRGSIIDLFPMGSELPF
RIDLFDDEVDTLRTFDPETQRSLEQVSNINLLPAREFPLDKEAIKAFRNRFRERFDVDFR
RCPIYQDLSNGITPAGIEAYLPLFFEHTATLFDYLPDSTQVFSLPGVEQAANQFWQDART
RYEDRKGDIERPILPPNELFIPTEEYFAKLKNWPRIIVHQEAIEPGVGREVFDTLPLPEL
TIESRSAEPLAAVRQFIEQTSGRVLFTAETAGRREVLLELLARIKLKPTSVESWKDFLAH
SDHVCIGLAPLVEELSLEALSIIPESSLLGQKFVQQRKQRKSSNATQNEHTIRNLTELRE
GAPVVHIDHGVGRYLGLTTLEIDNQATEFLLLEYADEAKLYVPVANLHLIARYSGSDDET
APLHRLGSEQWQKAKRKAAEQVRDVAAELLDIYARRAARKGFAFANPGADYATFSAAFPY
QETPDQQAAIDAVRSDMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAIQSGKQVAVLVPTT
LLAQQHYNSFRDRFADWPVKVEVMSRFKTAKETQAAAALLAEGKVDILIGTHKLLQSDIK
FNNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAFAGMRDLSIIATP
PARRLSVRTFVMPQQDAIVKEALLRELLRGGQVYYLHNDVKTIEKCAEDLAALVPEARIG
IGHGQMRERELEQVMNDFYHKRFNVLVATTIIETGIDVPSANTIIIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPNEKKITEDAKKRLEAIANAQDLGAGFILATHDLEIRGAGELL
GDGQSGEIQSVGFTLYMEMLERAVKAIQKGEQPNLNQPLDAGIEVNLRVSALIPDDYLPD
VQTRLTLYKRLASAENHEQLKDLQVEMIDRFGLLPEPAKNLVRVTELKLLADKLGIIKID
AGPQGGKLEFSSKTPVDPMQLIKLIQTQPNRYKFEGSTVFKFQVPMNTDQERFNTLEALL
ESLLPK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtattacccttacctaacatctcttccaatgccggtcgtcagcagtggggtaac
ctacgtggcgccagccgtgctttagctattagtgaggcagccaaagctgcacaacaccta
acgttattgctgacagataccagccaaaacgcacagctactgcaagaagaactcagctgg
ttcgcccctgaattaccgattctgcattttcctgactgggaaaccctgccctacgatgta
ttttctccgcaccaggatattatttcgcagcgtattgctagcctgtatcaattgcccaag
gttaaacaaggcgtattaattgtgccgattaataccgcgctctatcgtttagcccctact
cagtttctactgggttcaagcttagtattaaacaccggacaaacgctcgatgcagagcaa
ctgcgccatcaactgactgaagcaggttaccagtgcgttgatacggtatacgagcacggc
gagtatgcgattcgcggatcgattattgacttatttccgatgggctcggagctaccgttt
cgcattgatttatttgatgatgaagtcgacaccttacgcacctttgaccctgaaacgcag
cgctcgctagaacaagtcagcaatatcaatctgctacccgctcgtgagttcccgctggat
aaggaagcaattaaagcctttcgtaatcgctttcgtgaacgctttgatgtggattttagg
cgttgtccaatctaccaagacttatcgaatggcattacacctgccggcattgaagcctat
ctgccgctattttttgagcacaccgcaaccttatttgactatctacccgatagcacccag
gtcttttccctgcccggtgttgagcaagccgctaatcaattctggcaagatgcacgtact
cgctacgaagatcgtaaaggcgatattgagcgcccaattctgccgccaaacgaattattt
attccaacggaagagtactttgccaagcttaaaaactggccacgcatcattgtgcatcaa
gaagctattgagccaggtgttggccgcgaagtgtttgacaccctgccgctccctgagctc
accatcgagtcccgtagtgcagagcccttagcagcagtacgccagtttatcgagcaaacc
tcaggccgagtactctttaccgctgaaaccgcaggtcgtcgcgaagttcttttagagttg
ctggcacgcattaaactgaaaccaacttcggttgaaagctggaaagattttctcgcccac
agcgatcatgtttgcataggcttggcgccattggttgaagagctgagtcttgaagccctt
agcatcattcccgaaagcagcttacttggacaaaaatttgtccagcagcgcaagcagcga
aaaagcagcaatgcgacacaaaatgagcatactatccgcaatctaactgagctgcgtgaa
ggtgcccccgttgttcatattgatcacggtgtgggacgttatttagggctaaccacctta
gaaattgacaatcaagccactgagtttttattactggaatatgccgatgaggctaaactg
tacgtacctgtagctaacttgcatttaatcgcacgctacagcggcagtgatgatgaaacg
gcccccttacatcgcttaggttcagagcagtggcaaaaagccaagcgtaaagctgccgaa
caagtacgcgatgtggcagctgagctgttagatatttacgccagacgcgctgctcgcaaa
ggatttgcctttgccaaccccggcgccgattacgccacctttagtgccgcctttccttac
caagagacacccgaccaacaagcagccattgatgccgtgcgcagcgatatgttggccggt
aaaccaatggatcgcttagtgtgtggtgatgtgggctttggtaaaactgaagtggctatg
cgcgcggcctttattgcgattcaaagcggtaaacaggtggcagtcttagtgcctactacc
ctgcttgcccagcaacactataatagctttcgcgaccgctttgccgactggccggtaaaa
gttgaagtgatgagccgttttaaaactgctaaagaaacccaagctgccgccgcactactc
gccgaaggcaaggtagatattttaattggtacccacaaactgctgcaaagcgatattaag
tttaataatttaggcttagtcattattgatgaagaacaccgctttggcgtgcggcaaaaa
gaacaactgaaggcactgcgcagtgaagtggacattttaaccctaacggctacgccgatt
ccgcgcaccttaaatatggcttttgctggcatgcgtgatctatcgattattgctacgcca
ccggctcggcgcttatcagtgcgcacctttgttatgccgcaacaagatgccattgtgaaa
gaagccttattacgagagctgctacgtggtggccaggtttactacctacataatgatgta
aaaaccatcgaaaaatgcgccgaagatctagcggcattggtacctgaagcccgtattggt
attggccatgggcaaatgcgtgagcgtgagcttgagcaagtgatgaacgacttttatcac
aagcgttttaacgtattagtcgccaccaccattattgaaactggaattgatgtgccgagc
gccaacaccattattatcgagcgtgccgataagtttggcttagcacaactacaccagctg
cgtggacgcgttggccgcagccatcatcaggcctatgcgtaccttctgacgccgaacgag
aaaaaaattaccgaggacgccaaaaaacggctcgaagccattgccaacgctcaagactta
ggcgctggctttattctagccacccatgacttagagattcgtggcgctggagagttactc
ggggatggtcaaagcggtgaaattcagtccgtcggctttactttgtacatggaaatgctc
gagcgcgcggtcaaagccattcaaaaaggtgagcaacctaacctcaatcagcctttagat
gcgggaattgaagtgaacttacgggtctcagcgctcattcctgatgactatctgcccgat
gtacaaactcgtctgacactgtacaaacgtcttgcctcggcagagaaccacgaacaactc
aaagacttacaggtggagatgattgatcgttttggtttgctgccagaacctgccaaaaat
ttagtgcgagtaacagaattaaaattactggccgataagctgggaattattaaaattgat
gcaggcccacaaggcggcaaattagagttttctagcaagactccggtagatccaatgcag
ctgatcaaactgattcaaactcagcccaaccgctataagtttgaaggcagtacagtgttt
aaatttcaagtgccaatgaataccgaccaagagcgcttcaatacccttgaagccttgctt
gaaagcttacttcccaagtaa
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