Thiopseudomonas alkaliphila: AKN87_00770
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Entry
AKN87_00770 CDS
T04152
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pbb
Thiopseudomonas alkaliphila
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbb03032
]
AKN87_00770
03400 DNA repair and recombination proteins [BR:
pbb03400
]
AKN87_00770
Enzymes [BR:
pbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AKN87_00770
DNA replication proteins [BR:
pbb03032
]
Prokaryotic type
DNA Topoisomerases
AKN87_00770
DNA repair and recombination proteins [BR:
pbb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AKN87_00770
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AKX43810
LinkDB
All DBs
Position
162111..164705
Genome browser
AA seq
864 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDYIVKSSVGHIRDLPTSGSGGAKKASTAKELKLTPQE
KAQRQLVARMGVDPEHGWKARYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEAIAW
HLKEAIGGDDTRYKRVVFNEITKKAIQQAFAEPGELNIDQVNAQQARRFLDRVVGFMVSP
LLWKKIARGLSAGRVQSVAVKLVVEREKEIRAFIPEEFWQVHAELANQEKNQARFEVTRE
AGKAFRPVSEAQTKVALAKLQAATYQLVKREDKPTSTKPTAPYITSTLQQAASTRLGFGV
KKTMTLAQRLYEAGYITYMRTDSTNLSQDAIEMVRGFIESEYGKKYLPAKPSVYSSKEGA
QEAHEAIRPSDVSRLPTQLSGMERDAERLYELIWRQFVACQMTPAEYLSSSLTVEAAEFE
LRARGRILKFDGFTRVQPPQGKSAEDAVLPDMQQGEVLSLQKLDPSQHFTKPPARYSEAS
LVRELEKRGIGRPSTYAAIISTIQDRGYVTVQNRRFYAEKMGDIVTERLGESFANLMDYG
FTAQMEEQLDDVAQGQLQWKRLLDDFYGDFKQKLELADSKEGGMRENTPTLTDIPCKACG
RPMVIRTASTGVFLGCSGYALPPKERCKETMNLVPGNEIAADDEGESESLLLRHKRRCQI
CDTAMDAYLVDETRKLHVCGNNPDCEGYAVEQGQFRIKGYEGPSLECDKCGSEMQLKTGR
FGKFFGCTNSECKNTRKLLRNGEAAPPKMDPVPMPELKCEKVDDTYVLRDGASGLFLAAS
QFPKKRETRAPLVKEIIPHKDEIDPKHHYLMSAPTEDPDGLPTIIRYSRKNKEQYVQSEV
EGKATGWRAFYDGKQWQAEDKRKK
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctggttatcgtcgagtccccggctaaagccaagaccatcaataaatat
ttaggcaatgactacattgtgaaatccagtgtgggtcacattcgagacttgccaaccagt
ggctcgggtggtgcaaagaaagccagcaccgctaaagagcttaaattaacgccccaagaa
aaagcccaacgccaattagtagcgcgtatgggggttgatcctgagcatggttggaaggcc
cgctatgaaattttgccgggcaaagaaaaagtcattgaagagctgcgccgtctggctaaa
gatgccgacaccatctatctggcaacggacttggatagagaaggagaggcgattgcttgg
cacttaaaagaagcaattggtggcgatgacacacgctataagcgcgtggtatttaacgaa
attaccaaaaaagccattcaacaagcttttgctgaacccggcgagttaaatattgatcaa
gtcaatgcccagcaagcccgtcgttttcttgatcgggtagtagggtttatggtttcaccc
ttgctatggaagaaaattgcccgtggcttatccgccggtcgcgtgcaatcagttgccgtt
aaattagtggtcgagcgggaaaaagaaattcgtgcgtttattccagaagagttttggcaa
gtacacgctgagctggccaatcaggaaaaaaaccaagcacgctttgaagtcacccgtgag
gcaggtaaggcatttcgcccagtcagtgaagcacaaaccaaggtagcgctagcaaagctt
caagcggctacctaccagttagttaaacgcgaagataagccaaccagcactaagccaacc
gcgccctatatcacctcaaccttgcaacaagcggccagtacgcgcttgggatttggggtg
aaaaaaaccatgacccttgctcagcgattgtatgaagcagggtatatcacctatatgcgt
accgactcgactaacttgtcgcaagatgccatagagatggtgcgcggctttattgaaagc
gagtatggcaaaaaatatttaccggctaaacccagtgtttacagcagtaaagagggcgca
caagaggctcacgaagcgattcgcccctcagatgtgagtcgcttacctacgcaattaagc
ggcatggagcgtgatgcagagcgcctgtatgagttaatttggcgtcaatttgtggcctgt
caaatgaccccagcagagtacctctcaagtagcttaactgttgaggcggctgagtttgag
ttgcgtgctcggggtcgtattctgaaatttgatggttttactcgggtgcagccaccccaa
ggcaaatcggcagaagatgctgtattacctgatatgcagcaaggtgaagtgctgagctta
caaaagcttgatccaagccagcattttaccaagccaccggcgcgttactcagaggccagt
ttggtgcgagagttagaaaagcgtggcattggtcgtccctcgacctatgccgcgattatt
tcaaccattcaggatcgtggctatgtcaccgtgcaaaaccgccgtttttatgcggaaaaa
atgggtgatatcgtcactgagcgccttggggaaagctttgccaacttaatggactatggt
tttaccgcgcaaatggaagagcagctcgatgacgtagctcaaggtcagttgcagtggaaa
cgcctgctggatgatttctatggcgactttaagcaaaagcttgagctggccgatagtaaa
gaaggcggcatgcgagaaaataccccgaccttaactgatataccatgtaaggcctgtggt
cgaccgatggtgattcgaaccgcctcaacgggtgtattcttaggttgctcaggttacgcc
ctgccgcctaaagagcgctgcaaagaaaccatgaacttggttccgggtaatgaaattgcg
gccgatgatgaaggcgagtctgaatcgttgcttttgcgccataagcgtcgttgtcaaatt
tgtgatacggcgatggatgcttacttagtcgatgaaacccgtaagctgcatgtgtgtggt
aataatccagactgcgaaggatatgcggttgagcagggacaattccggattaagggctac
gaaggcccaagcctagagtgcgataagtgcggcagtgaaatgcagctgaaaactgggcgt
ttcggtaagttttttggttgtactaatagcgagtgtaaaaacacccgtaaactgctgcgt
aatggtgaagcagcgccaccgaagatggatccggtgcctatgcctgaacttaaatgtgag
aaggtagatgacacctacgtcctgcgtgatggcgcttcgggattatttttagctgccagt
cagtttccaaaaaaacgtgaaacccgcgcgcctttagtgaaagaaattatcccgcataag
gatgaaattgatccaaaacaccactatctaatgagtgcgccaactgaggatccagacggt
ttaccgaccattatccgctatagccgcaaaaacaaagagcaatacgtacagtctgaagtg
gagggtaaagctacgggctggcgtgctttttatgatggaaaacaatggcaggccgaagat
aagcgtaaaaagtaa
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