Thiopseudomonas alkaliphila: AKN87_02920
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Entry
AKN87_02920 CDS
T04152
Name
(GenBank) pseudouridine synthase
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
pbb
Thiopseudomonas alkaliphila
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbb03016
]
AKN87_02920
Enzymes [BR:
pbb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
AKN87_02920
Transfer RNA biogenesis [BR:
pbb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
AKN87_02920
Prokaryotic type
AKN87_02920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
CT021
Motif
Other DBs
NCBI-ProteinID:
AKX44169
LinkDB
All DBs
Position
complement(596281..597327)
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AA seq
348 aa
AA seq
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MTEAELLGPRAYGAALGRAWLKSAPLDFQVNEVLDIPFTGEGEHSWLYIEKQQLNTEQVA
KRLAEFAQVPVRQVSYAGLKDKQAITRQWFSLQLPGKQSPDFTQLNSEQLKVLQQARHQR
KLQRGSHKANQFVITLRQLALDVAPEELEQRLAQISQQGVPNYFGPQRFGREGFNLAFAR
QFAASHSLPDKRNVRSRLLSTARSFLFNQILAQRVTSGEWNQLISGDILSFTDSASFFPA
AEMQADDLRFAQLDTHPTGALWGKGELVSSAQAAAYEHSVAEQEADLASWLAAAGLKQER
RNLRLPVKQLTVKWLDTDALQLAFQLPVGCYATVVLRELFELTTAVSE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagccgaattgttagggcctcgcgcttacggcgccgcattaggtcgtgcatgg
ctaaaaagtgcgccccttgattttcaggtaaatgaagtgcttgatatacccttcaccggt
gagggcgagcacagttggctgtatattgaaaagcagcagcttaataccgagcaggtagct
aagcgcttagctgagtttgctcaggtaccggtgcgtcaggtgagctatgctgggctaaaa
gataagcaggcaattacgcggcaatggtttagcctacaactacctggtaagcagtcgcct
gactttactcagcttaatagtgagcagctaaaggtgctgcagcaagcccggcatcagcgc
aaactgcagcgggggagtcataaagcgaatcagtttgtgattactttaaggcagctggcc
cttgacgtagcccctgaagaattggagcagcgtttagcgcagatcagtcaacagggtgtg
ccaaattattttggcccgcaacgctttggccgcgaagggtttaatttagcttttgcccgc
caatttgccgccagccacagcctgccagacaaacgtaatgtacgttctcgcttattgtct
actgcgcgcagctttttatttaatcaaatactcgcccagcgagtgactagcggtgagtgg
aatcagttaattagtggcgatattttaagttttaccgatagtgctagcttttttcctgca
gccgaaatgcaggcggatgatctacgttttgcccaacttgatactcatccaacaggcgct
ttatggggtaagggcgagttagtaagcagtgcgcaagccgcagcctacgagcacagtgtc
gctgaacaagaagcagacttagccagctggttagccgctgccgggttaaaacaagaacga
cgcaatttgcgcttgccggttaagcagctaacagtcaaatggcttgatactgatgcttta
caattggcttttcaattaccggttggctgttacgctaccgtggtattacgtgaattattt
gagctaactactgcagtgagcgagtag
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