Thiopseudomonas alkaliphila: AKN87_03230
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Entry
AKN87_03230 CDS
T04152
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbb
Thiopseudomonas alkaliphila
Pathway
pbb03030
DNA replication
pbb03430
Mismatch repair
pbb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AKN87_03230
03430 Mismatch repair
AKN87_03230
03440 Homologous recombination
AKN87_03230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbb03032
]
AKN87_03230
03400 DNA repair and recombination proteins [BR:
pbb03400
]
AKN87_03230
Enzymes [BR:
pbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AKN87_03230
DNA replication proteins [BR:
pbb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AKN87_03230
DNA repair and recombination proteins [BR:
pbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AKN87_03230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AKX44219
LinkDB
All DBs
Position
complement(670417..673932)
Genome browser
AA seq
1171 aa
AA seq
DB search
MNPSFIHLRLHSEFSLVDGLVRIKPLMDALTQMNMPAVAITDQSNMCSLVKFYRSAMGKG
IKPIIGADIWLAAEERDQSATRLTLLAMNNQGYRNLTEIVSLGYTQGQHLGQMLVQKEWV
VANSEGLIALCGAKEGEIGRALLQRNSDKAKQLASFWQSTFPERFYLELQRTQRPGDEEH
VQQAIQLAAALELPVVATNDVRFLVQEDYEAHETRVCIGEGRILDDPRRPRNYSDQQYLK
TPEQMAQLFQDIPEALANTVEIAKRCNVEVRLGQHFLPDFPVPEGMTIDDYLRHVSFEGL
EERLSVSLPTDTEDYAAKRQVYVDRLTFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVG
PGRGSGAGSLVAYVLHITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVA
NAYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYSLGDRLSKMIPFEVGMTLNKAFEMEE
SLRDFVTHDEEAKEIWEMALKLEGVTRGTGKHAGGVVIAPTVLTDFSPVACDEDGSGLVT
QFDKDDVEAAGLVKFDFLGLRTLTIIKWALETINRDRAALGEEPLVIDFIPLDDKPTYQL
LQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRA
ELAYPHPDYQYAGLEPVLEPTYGIILYQEQVMQIAQVMAGYSLGEADMLRRAMGKKKPEE
MAKQRGGFIEGCARNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYP
PQFMAAVLSADMHNTDKVVTLIEECRSMQLNLLPPDVNSSDYKFTVDEQQQVVYGLGAIK
GVGEGPVEAIIEGRGATDFKDLFDFCARIDLKRVNKRTLDALVRSGAFDRLGPLFDENFE
RYKPQIDANRAILLQSMDEAIQAAEQTVRDRDSGHMDLFGGVFAEPEVNPYQKYLQARPL
SMKERLKGEKDTLGVYLTGHPIDEYEVEVRRFAKQKISDLNPSREPQTIAGLIVNLRVMR
NKRGDKMGFITLDDRSGRIEASLFADAFSQAETLLQTDALVVVKGVVSHDDFSGGLRFRV
NEVYSLEQARTNLASSLQLRLDYRLPPKQLQQIQQHLQQHRGACLVTIDYSTPGAKALLS
LADAWQVAPNDTLIQSLRDLLGEDNVFLDYR
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaacccttcatttattcatcttcgtttgcacagtgaattttctttagtcgatggttta
gtgcggattaaacccttgatggacgccctgacgcagatgaatatgccagcggtggcgatc
accgatcagagcaacatgtgctcgctggtgaagttttatcgtagtgcaatgggtaagggg
attaagcccattattggtgccgatatttggttggcggctgaggagcgtgatcaatctgca
acgcggttaacgctgctggccatgaataatcagggctatcgtaacctgaccgaaattgtt
tctttaggctatacccaaggccagcatctaggccagatgctggtgcaaaaagagtgggta
gtggctaatagtgaaggattaattgcgttatgcggagctaaagaaggtgaaattgggcgc
gccctattgcagcgcaacagtgataaagctaaacagttggcgagtttttggcagagcact
tttcctgagcgtttttatcttgagttacaacgcacccaacgccctggtgatgaagaacat
gtgcaacaggcaattcagttagcagcggcgcttgagctgccggtggtggcaactaatgat
gttcgttttttagtccaagaagactacgaggcccatgaaacacgggtatgtatcggagaa
gggcggattttagatgaccctagacggccacgtaactactctgatcagcaatatttaaaa
acacctgagcaaatggctcagctatttcaggatatccctgaagcgctggccaataccgta
gaaattgctaagcgctgtaacgttgaagtgcgcttaggtcagcactttttgcccgacttt
ccggtgccagaaggcatgaccattgatgattacttacgccatgtgtcctttgagggatta
gaagagcggctctctgtgagcttgccaacagacactgaggattatgcagcgaaacggcaa
gtttatgttgatcggctaaccttcgagctggatattattattcagatgggctttcccggt
tattttttaatcgtcatggactttattaagtgggcgaaaaataacggcgtgccggtaggc
cctggccggggttcgggggcgggaagcttagtggcttacgtgctgcatattactgacctt
gatccattgcagtatgacctgctgtttgagcgtttcttaaaccccgagcgggtgtcgatg
cccgactttgacgtcgacttctgcatggatggtcgtgaccgggtgattgagtacgtggcc
aatgcttacggccgtgatgctgttagccagattattacctttggcaccatggccgccaaa
gcggtggtgcgcgatgtggcgcgcgtgcaaggtaagccgtattcactgggcgatcggtta
tccaaaatgatcccctttgaagtggggatgactttaaataaagcctttgagatggaagag
tcgctgcgtgattttgtgacccatgatgaagaggctaaagaaatctgggaaatggcgctc
aagcttgaaggggtaacccgaggcaccggtaaacacgccggtggggtggtgattgcgcct
acggtgttaaccgacttttctccggtagcctgtgatgaagatggcagcggcctagttact
cagtttgataaagatgacgtagaagctgcagggctagtgaagtttgacttcttgggactg
cgaaccctcaccattatcaagtgggcgctagaaaccattaaccgtgaccgtgccgccttg
ggtgaagaacccttggtgattgattttattcctctagacgataaacccacctatcagtta
ttgcagcgagctgaaaccaccgcggtgttccagttggaatcacgggggatgaaagagctg
attaaaaagctcaagcccgactgtttagaagacttaattgcgttggtggcgttgttccgt
cctggtcctttgcagtcgggcatggtcgatgactttattaaccgtaagcacggccgcgcc
gaattagcctatccgcaccctgattatcagtatgccgggcttgagccggtgctggagccg
acctacgggattattttgtatcaagagcaagtgatgcaaattgcccaggtgatggctggt
tatagcctcggtgaggcggacatgttgcggcgggcgatgggtaagaaaaagcccgaagaa
atggccaagcagcgcggcggttttattgaagggtgtgcacgtaacaatattgatgctgat
ttggccggtaatatctttgatctggtggaaaagtttgccggttatggttttaacaagtcg
cactcggcggcttatgggctggtgtcttatcaaacagcgtggctgaaaacccattaccca
ccgcagtttatggcagcagtcttgtcggccgatatgcataacaccgataaggtggtgacg
ctgattgaagagtgtcgcagtatgcagctgaatctgttgccccctgatgtcaatagctca
gattataagtttaccgtcgatgagcaacagcaagtggtctatggcttaggggcgattaag
ggggtgggtgaaggtccggttgaggcaattattgaagggcgtggagcgacagactttaaa
gacctgtttgatttttgtgcgcggattgatttaaagcgggttaataaacgcaccctcgat
gccttggttcgttctggcgcctttgatcgattagggccgttatttgatgagaactttgag
cgctataaaccgcaaattgatgctaatcgggcgattttattgcagtccatggacgaggcg
attcaggccgctgagcaaaccgtacgcgatcgagacagtggtcatatggatttatttggc
ggtgtgtttgccgagcctgaggtgaatccttatcaaaaatacttacaggcacgcccccta
agcatgaaagagcgcctcaaaggtgaaaaagacactttaggggtttatctcaccggccat
ccaattgatgagtacgaagttgaggtgcggcgttttgccaagcaaaaaatcagtgatttg
aatccttcgcgcgagccgcaaaccattgctggattgattgtgaatttacgggtgatgcgc
aataagcggggcgataaaatgggctttatcacccttgatgatcgctccgggcgaatcgag
gcttccttatttgccgatgcctttagtcaggcagaaaccttattgcaaaccgatgcgtta
gtggtggttaagggggtggttagtcacgatgatttttctggtggattacgctttcgggtt
aatgaagtgtatagcttagagcaagcccgaactaatttagccagcagtttacagttgcgc
ttagattatcggctgccacccaagcagttacagcaaattcagcagcacttacaacagcac
agaggcgcttgcttagtcacaattgactatagtacgccgggggcaaaggcgttactgtcg
ttagcagacgcgtggcaagttgcgccgaacgatacgctgattcagtcgctacgtgactta
cttggtgaggataacgtctttttagattatcgctga
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