Thiopseudomonas alkaliphila: AKN87_04440
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Entry
AKN87_04440 CDS
T04152
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pbb
Thiopseudomonas alkaliphila
Pathway
pbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKN87_04440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbb03019
]
AKN87_04440
Enzymes [BR:
pbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AKN87_04440
Messenger RNA biogenesis [BR:
pbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AKN87_04440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AKX44428
LinkDB
All DBs
Position
917999..919402
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AA seq
467 aa
AA seq
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MLKALKKLFGMPTDPAAKQAPSTAASHTETSAAANNSKPRSRHATQSEPNKSTPPRKARP
AKAAPKKAAWSLSDFQVEPAAGKTRFHDFPLSEPLMHAIHDLGFPYCTPIQAGVLGHTIA
GRDAIGRAQTGTGKTAAFLISTITQLQQVPPPKERYMGEPRALIIAPTRELVAQIAQDAI
NLTRYTELNVMSFVGGMDFDKQLKALEKNYCDILVATPGRLLDFQQRGEVHLDMVEVLVL
DEADRMLDMGFIPQVRQIIRHTPPKSERQTLLFSATFTDDVMRLAEQWTINPAIVEIEPE
QVASDRVAQQVYAVANSDKYRLLRNLIQQNDWSRVMVFANRKDEVRRIEERLRKDGIKAA
QMSGDVPQNKRMRVLEDFKQGKLQVLVATDVAGRGIHIDGISHVINYTLPETPDDYVHRI
GRTGRAGTEGASISFAGEDDAFALPPIEALLGKKIDCEIPPEHLLKH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcacttaaaaaactatttggcatgcccaccgatcctgccgctaagcaagcg
ccatcgactgctgcaagccataccgaaactagcgctgctgcaaataacagcaagccgcgc
tcgcgtcatgctacgcaaagcgagccaaacaaatccactcccccacgtaaagcccgtcca
gctaaagctgccccgaaaaaagcggcttggtcactcagtgactttcaggttgaacctgca
gcaggcaagactcgcttccatgatttccccttgtccgagccactgatgcacgccatccat
gaccttggctttccttactgtacaccgattcaagcgggtgtattggggcacacaatcgcc
ggccgtgacgccattggtcgcgcccaaactggtactggtaaaactgcggcctttttaatt
tcaaccattacccaattacagcaagtgcctccccccaaagaacgctacatgggggagcca
cgcgccctaatcattgcgcctactcgcgaactcgtagcacaaattgcccaagatgcgatt
aacttaacccgctacactgagctcaacgtcatgagttttgtcggcggcatggactttgat
aaacaactcaaagcactagaaaaaaattactgcgacattttggtagcaaccccaggacgc
ctgctagattttcaacaacgtggcgaagtccacttggatatggtcgaagtcttggtcctt
gatgaagcagaccgtatgttagatatgggctttattcctcaagtacgccaaattattcgc
cacacgccacccaaatccgagcgacaaaccctgctattttcagcgaccttcaccgacgac
gtgatgcgcttagcagaacagtggacgattaacccagccattgtggaaattgaacctgaa
caagtcgctagcgatcgcgttgcgcaacaagtctatgcggtggctaacagtgacaaatac
cgtctattgcggaatttgattcagcaaaatgactggtcgcgagtcatggtctttgctaac
cgtaaagacgaagtacgacgcattgaagaacgtttacgtaaagatggtattaaagctgcg
caaatgtcaggcgatgttccacaaaacaaacggatgcgcgtactcgaagactttaagcaa
ggcaagctacaagtcttggtcgccactgatgtcgctggtcgcgggattcatattgatggc
atcagtcatgtgattaactacactctgccagaaaccccagatgattacgtgcaccggatt
ggccgcaccggacgcgctggcactgaaggtgcctcgatcagttttgcaggagaagatgat
gcttttgccctgccgccgattgaagctttactgggcaaaaaaattgactgtgagattcca
cctgagcatttattaaaacactaa
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