Thiopseudomonas alkaliphila: AKN87_05370
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Entry
AKN87_05370 CDS
T04152
Name
(GenBank) Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pbb
Thiopseudomonas alkaliphila
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pbb03000
]
AKN87_05370
Transcription factors [BR:
pbb03000
]
Prokaryotic type
Helix-turn-helix
Other families
AKN87_05370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_lid_14
AAA_5
PAS_9
AAA_2
HTH_30
HTH_28
PAS_4
HTH_1
PAS
Diguanyl_cycl_sensor
HTH_7
Mga
HTH_11
HTH_29
PAS_8
HTH_50
AAA
HTH_22
HTH_20
AAA_16
ATPase
AAA_7
AAA_22
HTH_23
nSTAND3
HTH_Tnp_ISL3
HTH_Tnp_1
UBA_HOIP
Motif
Other DBs
NCBI-ProteinID:
AKX45820
LinkDB
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Position
complement(1117065..1118882)
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AA seq
605 aa
AA seq
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MNTMWSRLSYPQIIKAARARSTAYGVNASADSCLKQQISLAELRKNNGLLLDAAEPVLER
LTEQFASFQSDALFILANREATILSVEGRSEQQQEISDVAPGVCWSESIRGTNALGTALV
EAQPMLINCGEHFLERLERYSCSSVLLNDADGAVTGVLSLARKGALPETQDSLLMLTLTA
SYIDRRLFISSQSEHIRLAFHCSPNYLDSPWQGLLSVSLDGHIMAVNDAACELLGQPREL
LLGQSCETFLGGRVPALKRITKGLSGSLKTKRGKLFYKILQMPETDALASYAPAKVKKQP
SYLTSANPKFEKNLGLAQRGFAKDLPILLLGETGTGKEVIARHLHNQSSRAGQPFVAVNC
AAIPEGLIESELFGYKEGAFTGARRGGMAGRLQQAQGGTLFLDEVGDMPVELQARLLRVL
QERHFTPLGGAQEQPLNIGLICATHRDLRQHVADKSFREDLYYRINGMSMQLPALRQRND
LSQLCELFLAREGFTKVTLSADLQRLFADYHWPGNIRQLEMVMRTLAALAEPEQQYFNLD
DLPDTLLEELQEALPQDAGTCIRSNENELIRQALMNHEGNVSAAARELGISRATLYRKLK
QLDNI
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaacactatgtggtcgcgtttaagttacccacaaattattaaagctgcgcgagcacga
agtacggcgtatggggtaaatgccagtgccgattcgtgtctaaaacagcaaattagcttg
gctgagttgagaaaaaataatggattattattagatgcagcagagcctgttttagagcga
cttaccgagcagttcgctagctttcaaagtgatgcgttatttattttagcgaaccgcgaa
gcgactattttaagtgtggaagggcgttcggagcagcagcaagaaatcagtgatgtagca
ccaggggtatgttggagtgaaagtatccgtgggactaatgctttaggaactgcgctagtc
gaagcgcagcctatgctgattaattgtggtgaacactttctggagcgtttagagcgttat
tcatgctcttcggtattgctcaatgatgccgacggcgcagtaacaggtgttttgagcttg
gcgcgtaaaggggctttacctgagactcaagacagcttacttatgctgactttaaccgct
agctatattgaccgacgtttgtttatcagtagccaaagcgagcatatacgtttggctttt
cattgcagtcctaattatttggattcaccctggcagggtttactctcagttagtttagat
ggccatattatggccgtgaatgatgcagcctgcgagctcttaggccagccaagggagtta
ttgttagggcaatcctgcgagacatttttaggtggacgagtccccgcgctgaagcggatt
actaaaggtttgtctggtagcttgaaaaccaaacgtggcaagttgttttataaaattttg
caaatgccagaaaccgatgctttagccagttatgcgccggctaaagtgaaaaaacagccg
agctatctgacttcagccaacccaaagtttgaaaaaaatctaggactagctcagcgtggt
tttgccaaagatttacctatcttattattaggtgagaccggtacaggtaaagaggtaatt
gcccgtcatctgcataatcaaagtagtcgtgcagggcagccttttgttgcggttaactgt
gcagctatacctgaaggtttaatcgagtctgagctatttggttataaagagggggcattt
actggtgcgcgtcgtggcggaatggctggtcgcctgcagcaggcgcagggtggcacatta
ttcctagatgaggtcggagatatgcctgttgagctacaggcgcgtttattacgtgtactg
caagagcgtcattttactcctttaggcggggctcaagagcagccgttaaatattggttta
atctgtgcgactcaccgtgatttgcggcaacatgttgcggataaatcgtttcgggaagat
ttgtactatcgaattaacggcatgagcatgcagctgccagcactcagacagcggaatgat
ttatctcagttatgcgagttgtttttagccagagaaggttttactaaggtgaccttaagt
gctgatttgcagcgcttatttgcagattatcattggccaggaaatattcgccagctagaa
atggtgatgcgcactttggctgctctagctgagcctgaacagcagtattttaatttagat
gatttacccgatactttgttagaagaattacaagaagccttaccgcaagatgctggtacc
tgcattcgtagtaatgaaaacgaattaattcgccaagctctaatgaatcatgaaggcaat
gttagtgcggcagcgcgtgagctaggcattagccgagccactttatatcgtaaattaaag
cagttggacaacatatga
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