Thiopseudomonas alkaliphila: AKN87_06585
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Entry
AKN87_06585 CDS
T04152
Name
(GenBank) hypothetical protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pbb
Thiopseudomonas alkaliphila
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pbb03009
]
AKN87_06585
Enzymes [BR:
pbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AKN87_06585
Ribosome biogenesis [BR:
pbb03009
]
Prokaryotic type
rRNA helicases
AKN87_06585
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
CMS1
MelC1
SPOC
Gal4_dimer
Motif
Other DBs
NCBI-ProteinID:
AKX45840
LinkDB
All DBs
Position
complement(1349839..1351176)
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AA seq
445 aa
AA seq
DB search
MLENLQQLGYQSMTAIQQASLPAILQGQDVIAQAKTGSGKTAAFGLGVLQQLNPRYFGCQ
ALVLCPTRELADQVAKELRRLARAQDNIKILTLCGGVPFGPQVGSLEHGAHIIVGTPGRI
QDHLRKGTVSFNGLKTLVLDEADRMLDMGFFDIMQEIIQATPSKRQTLLFSATYPVGIQQ
LAAEFLRQPVTIKVESQHQASQIQQYFYEVQPEQRLTAVEQLLRHYLPDSCVAFCQTKQQ
CNELVAHLEQQGIAAVALHGDLEQRDRDKVLTLFSSRCTRVLVATDVAARGLDIDDLPMV
LNVELARDPEVHTHRIGRTGRAGASGIAVSLVTPKEAYRAAAIEAQQSEPLAWYSLAALK
PSYQDYTPAMQCLNIGAGRKHKLRPGDILGALTGDAGLSGAQVGKISLFDHQAYVAVERA
VARKALQRLQEGKIKGRNLPVRFVS
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgctggagaatcttcagcagctgggctatcaatccatgacagcgattcagcaggccagt
ttgcctgctatcttgcaaggtcaagatgttattgctcaggctaaaaccggtagtggtaaa
actgcagcctttggtttgggtgtattgcagcagttaaatccacgttattttggttgtcag
gcgttggtattgtgcccaactcgtgagctggcggatcaagtggctaaagagctacgccgt
ttagctagagcgcaggataatattaaaattttaacgctctgtggtggtgtcccttttggt
ccgcaggtgggctcgttggagcatggtgcgcacattattgtgggcacaccggggcgcatt
caggatcatctgcgcaaaggtacggtgagctttaatggtttaaaaaccttagtacttgat
gaagctgaccggatgctggatatgggtttttttgacattatgcaagaaattatccaagcc
accccaagtaagcgccaaaccctattattttcagccacttaccccgtgggcattcagcag
cttgcggcagaatttttgcgtcagccggtgacgattaaggttgaaagtcagcatcaagct
agccagattcaacaatacttttacgaggtgcagccagagcagcgcttaacggctgtggag
cagctgctacggcattatcttccggatagttgtgtggcattttgccaaactaaacagcag
tgtaatgagttggtcgcccatcttgagcaacaaggtattgctgcggtggccttgcatggc
gatttagaacaacgcgatcgcgataaagtcttaactctgtttagcagtcgttgtacgcgg
gtattagtggcaacagatgttgcagcacgtggtttagatattgatgatttgccaatggtg
ctcaatgttgagttggctcgagatcctgaagtgcacacccaccgtattggtcgtactggg
cgggcaggggcgagtggcattgccgtgagcttggtcacgcctaaagaagcgtatcgtgca
gcagcgattgaagcccagcagagtgagccgttagcgtggtattcattagcagctttaaaa
ccaagctaccaagattacacacccgctatgcagtgtttaaatattggggcagggcgtaaa
cataaattacgtccaggtgatattttgggagccttaactggtgatgccggattgtcagga
gcgcaggtgggaaaaatttcactgtttgatcatcaggcctatgtggcggttgaacgtgca
gtggcgcgtaaggctctgcaacggttacaagagggaaaaattaaagggcgcaatttaccg
gtacgttttgtctcgtaa
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