Thiopseudomonas alkaliphila: AKN87_08220
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Entry
AKN87_08220 CDS
T04152
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pbb
Thiopseudomonas alkaliphila
Pathway
pbb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AKN87_08220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbb03400
]
AKN87_08220
Enzymes [BR:
pbb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
AKN87_08220
DNA repair and recombination proteins [BR:
pbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
AKN87_08220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
AKX45079
LinkDB
All DBs
Position
complement(1698673..1699452)
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AA seq
259 aa
AA seq
DB search
MRVISVNVNGIHTAIEQGLFDWLKGQNADVICLQHIGISAYEMEDPSLQLEGYYCYSVDA
MLPEQGGVAIYSRLQPKAVIMGLGFEESDHYGRFLQADFDKISIASLLLPSGHGGDEQLN
QKFRFMDQFSRYLDKQRRKRRDYIYCGSLFVAHQKLDVKHWRDCQQIPGFLPAERAWLDA
VIGEMGYVDALRDVSREGEQYSWWADSEQAELLNLGWRFDYQLLTPGLRRTARNARLFRN
PRFSQHAPLVVDYDWTLSV
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgttattagtgtcaatgtgaatggtattcacactgcaattgaacaaggattattt
gactggctgaaaggtcaaaatgccgatgttatttgcttgcaacacattggtattagcgcc
tacgagatggaagaccctagcttacagcttgagggctattattgttatagcgttgatgcc
atgttgccagagcagggcggggttgccatttactcgcggctgcagcccaaagcggtaatt
atgggcttaggttttgaagagtccgatcattatgggcgctttttacaggcggattttgac
aaaatcagtattgcgagcctgttgttaccttctggccacggtggcgatgagcagctaaat
cagaagtttcgctttatggaccagttttctcgctacctagataagcaacgccgtaagcgt
cgtgattacatttattgcggttcgttatttgtcgcgcaccaaaagctggatgttaaacat
tggcgtgattgccagcagatccccggctttttacctgccgagcgagcttggttagatgcc
gttattggtgagatgggctatgtcgatgccttgcgcgatgtgagccgtgagggtgagcaa
tacagttggtgggccgatagtgaacaagccgagctacttaatctaggctggcgctttgat
tatcagcttttaactccaggtttacgccgcaccgcacgtaatgcccgtttgttccgcaat
ccgcgcttttcacagcatgcgcccttggtagtggattatgactggacgttaagtgtgtaa
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