Thiopseudomonas alkaliphila: AKN87_09020
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Entry
AKN87_09020 CDS
T04152
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pbb
Thiopseudomonas alkaliphila
Pathway
pbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKN87_09020 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbb03021
]
AKN87_09020 (rho)
03019 Messenger RNA biogenesis [BR:
pbb03019
]
AKN87_09020 (rho)
Transcription machinery [BR:
pbb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AKN87_09020 (rho)
Messenger RNA biogenesis [BR:
pbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AKN87_09020 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Mor
Motif
Other DBs
NCBI-ProteinID:
AKX45209
UniProt:
A0A0K1XE41
LinkDB
All DBs
Position
complement(1866992..1868254)
Genome browser
AA seq
420 aa
AA seq
DB search
MNLTELKKKPVAELLHMAEQMGLDNMARSRKQDIIFSILKRHARSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRPPKDGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPNQRLLMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPIRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLSIIATALVETGSKMDEVIYEEFKGTGNMELQLDRRVAEKRVFPAINI
NRSGTRREELLTSEEELQRMWILRKLLHPMDEIAAIEFLLDKLKDTKTNDEFFMSMKRSK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaattaaagaaaaagccagtggcagagcttctgcacatggcagagcaa
atgggccttgataatatggctcgctcacgtaaacaagacatcattttctctattctgaag
cgtcatgcgcgcagtggagaagaaatttcaggtgatggcgtactagaaattttacaagat
ggctttggttttttacgctcagctgactcgtcttacttagccggtcctgacgatatttat
gtttctccgagtcaaattcgtcgctttaacctgcgcaccggagacaccattattggtaaa
attcgcccacctaaagatggcgagcgttattttgctttactcaaggttgattcgattaac
tttgatcgcccagaaaacgccaaaaataaaattctatttgagaacctcactcctctcttc
cctaatcagcgtctgttgatggaagccggtaatggttcgactgaagatttaaccggccgt
gtgattgacctgtgtgcacccattggtaaaggccaacgcggactgatcgtcgctccgcca
aaagcgggtaaaaccatcatgctgcaaaacatcgcagccaacattacccgcaataaccca
gaatgccatctgatcgtgttactgattgatgagcgccctgaggaagtgaccgaaatgcag
cgcactgtgcgcggtgaagtggtcgcctcaacctttgatgagccacctattcgtcacgta
caggtggccgaaatggtgatcgaaaaagctaagcgcttggtcgagcacaaaaaagatgtg
gtgattcttttagactccattacccgtctagcccgtgcctataacaccgtggttcctagc
tctggcaaagtactaacgggtggggttgatgcccatgccttagaaaagcctaagcgcttc
tttggtgcggcacgtaatattgaagaaggtggctcgttgtcgattatcgccactgcccta
gtagaaaccggttcgaaaatggacgaagtgatctacgaagagtttaaaggcaccggtaac
atggagttgcagctagatcgccgagtggcagaaaagcgtgtgttccctgcgataaacatt
aaccgttcgggcacccgtcgtgaagaactgctcacctcggaagaagagctacaacgtatg
tggattctgcgcaaactgctgcacccaatggatgaaattgcagcgattgaattcttattg
gataagctcaaagacaccaaaaccaacgatgaattctttatgtcgatgaagcgcagtaag
taa
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