Thiopseudomonas alkaliphila: AKN87_10675
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Entry
AKN87_10675 CDS
T04152
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pbb
Thiopseudomonas alkaliphila
Pathway
pbb03030
DNA replication
pbb03410
Base excision repair
pbb03420
Nucleotide excision repair
pbb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AKN87_10675
03410 Base excision repair
AKN87_10675
03420 Nucleotide excision repair
AKN87_10675
03440 Homologous recombination
AKN87_10675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbb03032
]
AKN87_10675
03400 DNA repair and recombination proteins [BR:
pbb03400
]
AKN87_10675
Enzymes [BR:
pbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AKN87_10675
DNA replication proteins [BR:
pbb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AKN87_10675
DNA repair and recombination proteins [BR:
pbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
AKN87_10675
NER (nucleotide excision repair)
GGR (global genome repair) factors
AKN87_10675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AKX45501
LinkDB
All DBs
Position
complement(2207469..2210195)
Genome browser
AA seq
908 aa
AA seq
DB search
MSTAPLVLVDGSSYLYRAFHALPPLTTSKGQPTGAIKGVLNMLRSLEKDYPDSTLVVVFD
AKGPTFRDTLFEQYKAQRPPMPDDLRSQIAPLHQAVKALGLPLLCVEGVEADDVIGTLAI
QASELQIPVVISTGDKDMAQLVNEHITLVNTMTNTVMDIEGVKAKFGIGPELIIDFLALM
GDKADNIPGVPGVGEKTALGLLTGLNGGMDTIYANLDKIATLSFRGAKTLAPKMEEHREM
AYLSRELATIKLDVELDYRADQLKASEPDYATLAELYRELEFKSWLNALSNKAEAIDLPP
AEPELAIDYQTLLTWETFDAWLQQLAQAKVFAFDTETTSVDAQQAQLVGFSVAITPGIAA
YVPLAHSYMGVPEQLDFAQVLSKIKPILENPAIGKICQNAKYDINVLANYGIQLQGLAAD
TMLESYVLNSTATRHDMDSLALKYLGQPTVKFEDIAGKGAKQLTFDQIDLAQAGHYAAED
ADLTLRLHQALQQQLAPIPSLQRVLDTIELPLVPVLAQMERHGALVDAHLLGKQSLELGE
KLTELERQAFEIAGEEFNLASPKQLGTILYEKLGLPILAKTAKGQPSTAESVLSQLAEDG
HQLPILLMEYRSLSKLKSTYTDSLPQQINPATGRIHTNYHQAVTATGRLSSSNPNLQNIP
IRTPEGRRIRQAFIAKPGYKLIAADYSQIELRIMAHLAQDASLLDAFRHDRDVHRATAAE
VFGVSLEQVSNEQRRRAKAINFGLIYGMSAFGLAKQIECSRSEAQEYIERYFTRYPGVQD
YMERTRQQAAEQGYVETIFGRRLYLPEIKAKNPAMRRAAERTAINAPMQGSAADIIKRAM
IEVQQWLQDKQWDAQMIMQVHDELILEVRKDQVDAISQGLIERMQAAAELDVPLIVEAGV
GDNWDQAH
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtctactgcacctttagttttagttgatggctcgtcttatttataccgagcatttcac
gccttacctccactaaccacctccaaaggccagccaacaggggcgattaagggcgtactc
aatatgctccgcagcctagaaaaagactatcccgatagcaccctcgtggtggtgtttgat
gcgaaaggcccaacctttcgtgacaccctcttcgagcagtacaaagcgcaacgtccgccc
atgcctgatgacttacgtagccaaattgctccgctccaccaagcagttaaagccttgggc
ttgcctttattatgcgttgaaggtgtagaagcggatgatgtgattggcaccctggcaatt
caagcctctgagttacaaattccggtggtaatttccaccggcgataaagatatggcgcag
ctcgtcaacgagcacatcacactggttaacaccatgaccaataccgtgatggatatagaa
ggcgttaaagccaagttcggtattggccctgagttaattatcgactttttagccttgatg
ggcgataaagccgacaatattcctggcgtacctggcgtcggggaaaaaacagcgcttggc
ttactgaccggcttaaacggtggcatggatacgatttatgccaacctcgataaaattgct
acgctgtctttccgtggcgctaaaacattagcacctaaaatggaagaacaccgtgaaatg
gcttacttatcccgtgaattagccactattaaactggatgttgagttggattaccgcgcc
gatcaactcaaagccagtgagccagattatgctactctcgccgagctttaccgcgagctt
gagtttaaaagttggctcaatgccttaagtaataaagccgaagccatcgatttaccgccg
gccgagcctgagttagctatcgactaccaaacccttctaacctgggaaacgtttgatgca
tggctacaacagctagcacaagccaaggtgttcgcttttgataccgaaaccaccagtgtc
gatgcacaacaagcgcagctggtaggtttttcagtggcaatcacgccaggcatcgcagct
tatgtgcctctggcccacagttatatgggcgtacctgaacaactggattttgcacaggta
ctgagcaaaattaagcctattttagaaaatcctgccattggtaagatctgccagaacgcc
aaatatgatatcaacgtgctagctaactatggcattcaactgcaaggcttagccgctgac
accatgcttgagtcttatgtattaaactcaaccgccactcgccatgatatggacagctta
gcgcttaaatacctaggccagcccacggtcaagtttgaagacattgctggcaaaggcgct
aagcaacttacttttgatcaaattgatttagcccaagccggccactacgctgcagaagat
gctgatctgacgctgcgcttacatcaggctctgcagcaacagctagcccctattccaagc
ttacaaagagtactcgatacgatagagctgccattggtaccggtactggcgcaaatggag
cgccatggagcattagtagacgcccacttgctaggtaagcaaagtttagagctgggtgaa
aaactgactgaactagagcgacaagcctttgaaattgctggtgaagaatttaatcttgct
tcacctaagcagttaggcactattttgtatgaaaagcttggcctacctatcttggccaaa
accgctaagggccagcctagcacggcagaatcagtcctttcccaattagcagaagatggt
catcaactccccatactgctaatggagtaccgcagcctaagtaaactaaaaagtacctat
accgatagtttgccacaacaaattaatcccgccacggggcgcattcacaccaactatcat
caagcagttactgccactggacgcctgtcgtctagtaatccaaacttgcaaaatattcca
atccgcacccctgaaggtcgccgcattcgccaagcatttattgccaagccaggttataaa
ctgattgccgctgactactcgcaaattgagttgcgcatcatggcgcacctcgctcaagac
gccagcttattagatgccttccggcatgaccgcgatgtgcaccgcgccactgccgctgaa
gtctttggcgtcagcttagaacaggttagtaatgaacaacggcgccgggcgaaagcgatt
aacttcggactaatttacggcatgagtgcctttggtttagccaaacaaattgaatgctca
cgcagcgaagcacaagaatatatcgagcgttatttcacccgttaccctggggtgcaagat
tatatggaacgcacccgtcagcaagccgctgagcaaggctatgtcgaaaccatttttggg
cgtcgcttatatctacccgaaattaaggccaaaaaccccgctatgcgccgcgccgccgaa
cgcaccgcgattaatgcgccaatgcaaggcagcgctgcagatatcattaagcgcgcaatg
attgaagtacagcagtggctgcaagataagcaatgggatgcccagatgattatgcaggta
catgatgaattgattttagaagttcgaaaggatcaggtagatgctattagccaaggctta
attgaacgtatgcaagccgcagctgagctggatgtacctttaattgttgaggcaggtgtg
ggggataactgggatcaagcccattaa
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