Thiopseudomonas alkaliphila: AKN87_10870
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Entry
AKN87_10870 CDS
T04152
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pbb
Thiopseudomonas alkaliphila
Pathway
pbb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AKN87_10870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbb03400
]
AKN87_10870
Enzymes [BR:
pbb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
AKN87_10870
DNA repair and recombination proteins [BR:
pbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AKN87_10870
Prokaryotic type
AKN87_10870
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AKX45537
LinkDB
All DBs
Position
2251612..2252295
Genome browser
AA seq
227 aa
AA seq
DB search
MRQRPVQLEDSWKAVLEGEFTQPYMVQISQFLRDEIAQGKQIYPPGPLMFNAFTLTPLPQ
VKVVILGQDPYHGEGQAHGLSFSVPEGIAIPPSLLNIYKELQRDLGLAIPNHGDLTAWAQ
QGVLLLNTSLSVERANAGSHAKLGWQQFTDKVIAAVSAQQQHVVFMLWGAHAKSKIGLID
RTKHLVLTSVHPSPLSAYRGFIGCGHFSRCNQFLQQSGLTPIDWQLS
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcaacgcccagtacaattagaagacagctggaaggcagtgcttgagggtgagttt
acgcagccctatatggtgcagatttcgcagtttttgcgcgatgaaatagctcagggtaag
caaatttatccaccagggcctttaatgtttaatgcctttactttaacgcccttgccgcaa
gtgaaggtggttattcttgggcaggatccttatcacggcgaaggccaagcccatggttta
agcttttcggtgcctgaaggcatcgctattccgccatcgttattgaatatctataaagag
ttgcagcgtgatttaggcttggcgattccgaatcatggagacctcaccgcttgggctcaa
cagggcgtattgttgcttaataccagcttgagtgttgagcgggcgaatgctgggtcccac
gcaaagttgggttggcagcagtttaccgataaggtaattgctgcagtcagtgcccagcaa
cagcacgtggtctttatgctgtggggggctcatgctaaaagtaagatcggcttaattgat
cgcactaagcatctggtgctgacctcagtccatccttcaccgctatcggcttaccgtggc
tttatcggttgtgggcattttagccgctgtaatcaatttctccagcagtcaggtttaaca
ccaatcgattggcagttaagttaa
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integrated database retrieval system
