Thiopseudomonas alkaliphila: AKN87_10915
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Entry
AKN87_10915 CDS
T04152
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pbb
Thiopseudomonas alkaliphila
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbb03016
]
AKN87_10915
Enzymes [BR:
pbb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AKN87_10915
Transfer RNA biogenesis [BR:
pbb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AKN87_10915
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AKX45542
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All DBs
Position
2258129..2259253
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AA seq
374 aa
AA seq
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MSIDIQWVTSDQELSEKCAQWAKLSYLAVDTEFIRVSTFYPIAGLIQLSDGQSVFLIDPL
LITDWQPFKELLESKQVIKVLHACGEDLEVFARLMEARPQRLFDTQIAAGLLNIGFSMGY
SRLVQALLHIELPKGETRSDWLQRPLSETQVLYAAQDTLYLVQVYLQLAERLSAEKLQWL
FEDGDTLVQLHTAKSEPELRWQLIKQAWKLNRQQLGVLQHLTAWREEQAMSRDVPRSRVL
KDSSLYALAEQQPTSLYQLSDIVDMHPNTIRREGAKVLSLIQQALKKPAEQWPESLPQPL
TVTEAKQLKKLHRWAKLQAQQLDIAPEMMVKKKCLEALLRSGLETGYYQLPESLSGWRRQ
QLGDLLLDRLQENV
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
gtgtctatagatattcaatgggtgactagcgatcaagagctaagtgagaagtgtgcgcaa
tgggcaaaattaagctacttagccgtcgacactgagtttattcgagtgagtaccttttat
cctattgctggcttaattcaactcagtgatgggcagagtgtttttctgattgaccctttg
ttaattacagactggcagccttttaaagagctattagaaagcaagcaggtgatcaaggtg
ttacatgcttgcggtgaagatttggaagtctttgctaggttaatggaggcaaggccacag
cgtctttttgatactcagattgcggctgggttattaaatattggcttttctatgggctac
tcacggctggtgcaggcattgttacatattgaactgcccaagggagaaacccgttctgac
tggctccagcgtccactgagtgagacccaagtgctgtatgcagctcaagatacgttgtac
ttagtccaggtttatttgcagttagctgagcgcttatcagcagaaaagctacagtggcta
tttgaagatggtgataccttggtgcagctacatacagccaagtcagagcccgagctgcgc
tggcaactgattaagcaggcttggaagctaaatcgtcagcagctaggagtgctgcagcat
ttaacggcgtggcgtgaagagcaggcgatgagccgtgacgtgccgcgtagtcgcgtactg
aaagatagctcgttatatgctttagctgaacagcagccgactagcctctatcagctatca
gacattgtagatatgcatcctaataccatacgccgtgaaggggctaaggttttaagcttg
attcagcaagcgctaaaaaagcccgccgagcagtggccagagtcactgccacagccgtta
acagtgaccgaggctaagcagctgaagaagcttcatcgttgggcaaaactacaggcgcag
cagttagacattgcgccagaaatgatggtgaaaaagaaatgcctagaggcattgctaaga
agtggcttggaaacaggatactatcagttacccgaaagtttatcgggttggagaagacag
cagctaggtgatttactcctagaccgtttgcaggaaaacgtctga
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