Thiopseudomonas alkaliphila: AKN87_11820
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Entry
AKN87_11820 CDS
T04152
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbb
Thiopseudomonas alkaliphila
Pathway
pbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKN87_11820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbb03019
]
AKN87_11820
03009 Ribosome biogenesis [BR:
pbb03009
]
AKN87_11820
Enzymes [BR:
pbb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AKN87_11820
Messenger RNA biogenesis [BR:
pbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AKN87_11820
Ribosome biogenesis [BR:
pbb03009
]
Prokaryotic type
rRNA processing factors
AKN87_11820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AKX45705
LinkDB
All DBs
Position
complement(2452125..2455229)
Genome browser
AA seq
1034 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKSNIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKDIAREYFNSSYQGGRVNIKEVLSEGQEIIVQVDKEERGNKGAALTTMISLAG
RYMVLMPTNPRAGGISRRIEGEERQELRAALNSLNAPADMGFIVRTAGLGRSTQELQWDL
DYLVNLWNAIKEAADKDAAPFLVYQESNVIVRAIRDYLRQDIGEVLIDTIDAQKEALAFI
EQVMPQYASKVKLYQDSVPLFNRFQIESQIESAFQREVKLPSGGALVIDPTEALVSIDIN
SARATRGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEDRMRE
CLEVDRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGVIRDVESISLAILR
LIEEEALKERTAEVRARVPFQVAAFLLNEKRNAITKIELRTRVRIFILPDEHLETPHFEV
MRLRDDNPEALSGLSSYEMASDDNSDEQSTSTPHSTRSLVREEAAVKVLPSDRASLPVAS
TPATPSSQEPSLFKGLVKSLVSLFASKPEEEAKPAAASEEAPRKEERRPARNNQRRRDNP
RTNRNERTERNSNREEERKTREESRTTRDNERATQDERPAREDSRRERPVREERRERPAR
QERTERQAPAADEVSQASTPQEAHNTRFEQQDDERPRRRSRGQRRRSNRRERLPEELQQA
QEKAQSTPAEATAAETVEAPSTPAVEPKTAASEPKRTPLATPAPIEIRAAAPNPEPAVTP
TKAPEAAPEVVTPAQPVTEAPAAPPVAAAASPTPAVAEPVSAPAKAEAVSVEKAEQVKAE
PAPVAPLTESKTAEPQPTAIAEVQAAPAATAPVTPVVEKPVAAPVSKQPQPAAPEQQTAA
SPAAQSSSDEALLAILASATTPNSGRAFGKAGPTIDPAIVQAAKQAEVEAQQQATQAKTE
RETTSSAPQVTFEPLERPVGRASNDPRERRRQQRLAEQAPIQAEAAPVVATSPETPAVAE
TAEESETKPGTEPA
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaacgccacgcaacctgaagagttgcgtgttgccctagtagacggtcaacgt
ctgtttgatttagatattgaatcaggcgcccgtgaacaaaaaaaatccaatatttataaa
ggtcgcattactcgcatcgagcctagccttgaagcagcatttgttgattttggctctgag
cgccatggtttcttaccgttaaaagacattgcccgcgagtacttcaatagttcttaccaa
ggcggtcgcgtcaatatcaaagaagtcttgagcgaaggccaagaaattatcgttcaagtt
gataaagaagaacgcggcaataaaggtgcagctctaacgaccatgatcagcctcgctggc
cgttacatggtattaatgccaactaacccacgtgctggcggtatttctcgccgcatcgaa
ggtgaagagcgccaagaattacgggctgcccttaactcgctgaatgcgcccgcagatatg
ggctttatcgtccgcacagcgggcttaggccgtagtacccaagagctacagtgggatctt
gattacttagttaacctatggaatgccattaaagaagccgctgataaagacgctgctccg
ttcttggtctaccaagaaagtaacgtgattgtccgcgccatccgcgactacttacgccaa
gacatcggcgaagtcttaattgataccattgatgcccaaaaagaagcgctcgcctttatt
gaacaggtgatgccgcagtacgccagtaaggttaagctctatcaagacagtgtaccttta
tttaaccgcttccaaattgaaagccaaattgaaagcgccttccagcgcgaagttaaactg
ccctctggcggtgctttggtcattgacccaaccgaagccttggtatcaattgacattaac
tcggctcgcgctacccgcggcagcgatattgaagaaaccgcactgcaaaccaacttagaa
gccgccgaagaaattgcccgccaattacgcctgcgtgatattggtggcttgatcgtgatc
gactttatcgacatgactcctgccaaaaaccagcgtgctgttgaagatcgtatgcgcgaa
tgcctagaagtcgaccgggcacgggtacaagtaggccgcatttcacgctttggcttactg
gaaatgtctcgtcagcgtctgcgcccttccttaggtgaaaccagtggcattgtctgccca
cgctgtaatggccaaggcgtcattcgtgatgtggagtcaatttcactggcgattttacgt
ctgatcgaagaagaagctctgaaagagcgcactgctgaagtccgtgcacgggttccattc
caagttgctgcgttcttactcaacgaaaaacgtaatgccatcaccaaaatcgagctgcgc
acccgagtacgcatcttcattctgcctgacgagcacttagaaacaccgcactttgaagtg
atgcgcctgcgtgatgataacccagaggctttatctggcttatcaagctatgaaatggct
agcgatgataacagtgatgagcaatcgaccagcacaccgcactccacgcgctcgttagta
cgtgaagaggccgcagttaaagtgttaccctctgatcgcgccagcttacccgttgcttcc
accccagcaacgcctagcagccaagagcctagcctgtttaaaggcctagtaaaatcctta
gtgagtctgttcgccagcaagcctgaagaagaagcaaaacctgcagcagctagcgaagaa
gcaccacgcaaggaagagcgtcgcccggcacgcaataatcagcgtcgccgcgataaccca
cgcactaaccgtaacgagcgtacagagcgcaactccaaccgtgaggaagagcgtaaaacc
cgcgaagaatcacgtactactcgggataatgagcgtgcaacccaggacgagcgtccagct
cgtgaagacagccgccgtgaacgcccagttcgtgaagagcgccgcgagcgtccggcccgc
caagagcgtactgagcgccaagcgccagctgccgatgaggtgagccaagccagcacgcca
caagaagcccataatactcgctttgagcaacaagatgatgagcgtccacgtcgtcgctcg
cggggccagcgtcgtcgtagcaatcgccgcgaacgcttaccggaagagctgcaacaagcg
caagagaaagctcaatccactccagcagaagccacggcagctgaaacagtcgaggcacct
agcacaccagctgttgagcctaaaactgctgctagcgagcctaagcgcaccccgctggca
accccagcgccgattgaaattcgcgccgcagcccctaaccctgaaccggcggttacacca
accaaggcacctgaagccgcacctgaagtagtcactccagctcagcctgtaaccgaagcg
ccagctgcgccgccagttgcagccgctgccagcccaactccagctgtagctgagcccgta
tcggcacctgctaaagccgaagcggttagcgtagagaaagctgagcaggttaaagcagag
ccagcacctgtagcaccgctgaccgaaagcaaaaccgctgagccacagccaacagcaatc
gctgaagtccaagctgcgccagctgctactgcgccagttacaccagtcgttgaaaagcca
gtggccgctcctgtaagcaagcagccgcagccagcagcgccagagcaacaaacagctgca
agccctgctgctcaaagctctagcgatgaagcactgttagccatattagcctcagcaact
acacctaactcaggtcgcgcctttggcaaagccggtccaacgattgatccagctattgtg
caagcggctaaacaagctgaagttgaagcccagcaacaagcaactcaagccaaaactgag
cgtgaaaccactagcagcgccccacaagtgacctttgagccactggagcgcccagttggt
cgcgcctctaatgacccacgtgagcgtcgtcgtcagcagcgcttagccgagcaggcccca
atccaagcagaagcggcgccagttgttgcaactagccctgaaacaccagcagttgccgaa
actgctgaagaatcagaaactaagccaggcactgagccagcttaa
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