Pseudomonas brassicacearum DF41: CD58_01365
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Entry
CD58_01365 CDS
T03174
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD58_01365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbc03019
]
CD58_01365
03400 DNA repair and recombination proteins [BR:
pbc03400
]
CD58_01365
Enzymes [BR:
pbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CD58_01365
Messenger RNA biogenesis [BR:
pbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CD58_01365
DNA repair and recombination proteins [BR:
pbc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CD58_01365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
HAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHL31625
LinkDB
All DBs
Position
302409..304337
Genome browser
AA seq
642 aa
AA seq
DB search
MHSTLEQVFGYPQFRPGQETAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGIASASIDSAQSRDEANDAMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFGIPQVLLLTATATPKVIADM
QAKFAIAADDVVTTGFYRPNLNLLVEPVRGADKRARLVQWLGERPGQPSIVYVTLQRTAE
QIAEHLSQHGIGAEAYHAGLPHEQREAIQRRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRCVLEELK
AAASDGQWEFLLSPLADQSNIRQLPLKTLLVQLELRRLIAPRYAYFAEYRFKFLTEPQAL
LEHFEGERRDFVSAIIQTSSRARSWATVNFDGMYQQYHAERNRVVKALDYFQEKGWIELE
SKQMTEVYSVLEAGLDAQVLSAELHAYFTRHERGEIARIHAMLELFATDRCLGYRLAQYF
GDDNAPQQCGHCSVCHGKVAQLPEPPSLPALVDKSFETLCGDFIHRHEEHTGNPPSAERL
TRFLCGISVPLFTRLKARKIRGYAALEEYPYAEVRHWAQAQL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcaccctggaacaggttttcggttatccacagtttcgccccggtcaggaaacg
gccatcagcgcagtactggccggtcggtcggcggcggccatttttcccaccggttccggc
aagtccctgtgttatcaattgccagccctgctattgccgcacctcaccttggtggtctcg
cccctgctggcgctgatgcaggaccagttggcgttcttgcagcgccacggcatcgcgtcg
gccagtatcgactcggcccagagccgtgacgaagccaatgacgccatggcgcgggctcgc
tcgggtgagttgaagattctgatgatttccgtggagcggctgaagaacgagcgcttccgc
aacttcctgcaacaggtgccgatctcgttgctggtggtggacgaggctcattgcatttct
gaatgggggcataattttcgcccggactacctcaagcttcccgactatcagcgtcagttc
ggtattccccaggtattgctgctgacggccaccgcaacaccgaaggtcattgccgacatg
caggcgaagttcgccattgccgccgacgatgtggtgacgaccggtttctatcggcccaac
ctcaatttgctggtcgagccggtgcgcggtgcggacaagcgcgcccggctggtgcaatgg
ctgggcgagcgtcccgggcagccgagcatcgtctacgtcaccttgcagcgaaccgccgag
cagatagctgagcacctgagccagcacggtatcggggccgaggcctatcacgccggcttg
ccccatgagcaacgcgaagccatccagcggcggttcatgggtgggcagtccaattgcatt
gtcgcgaccatcgctttcggcatgggcatcgacaagagcgatatccgcaacgtggtgcat
ttcgacctgcccaaatccattgaaaactacagtcaggagatcggccgggccggacgggac
gggcagccatccgattgcctggtactggccaatcgcgacagcctcaacgtgttggagaac
tttgtgtatggcgatacgcccgagctggaaggcattcgctgcgtgctcgaagagctgaag
gccgctgcttccgatgggcaatgggagtttttactgagccccctggcggaccagagcaac
atccggcaactgccgctcaagacgttgctggtccagctggagctgcgtcggctgatcgcg
ccgcgttatgcctatttcgcggagtatcgcttcaagttcttgaccgagccacaagcgctg
cttgagcacttcgaaggtgagcgaagggacttcgtctcggccatcatccagacctccagc
cgtgcccggagctgggccacggtgaatttcgacgggatgtaccagcaatatcacgctgaa
cggaatcgcgtggtcaaggcgctggattatttccaggaaaaaggctggatcgagctggaa
agcaaacagatgaccgaggtgtacagcgtgctggaagccggccttgatgcgcaggtcttg
agtgccgagctacacgcctacttcactcggcacgaacgcggtgaaatcgcgcggatccat
gccatgctcgagctgtttgccactgaccgttgcctcggctatcgattggcgcagtatttc
ggcgatgacaacgcgccgcagcagtgcggtcattgctcggtgtgtcacggaaaagtcgct
caactgccggagccaccttcgttgccggcacttgtggataaaagcttcgagacactgtgt
ggtgattttatccacaggcatgaggagcacactggtaacccaccttctgccgagcggttg
acccggtttctgtgcgggatcagcgtgccgttgttcacccggttgaaggcgcgaaagatc
cgtggatatgccgcactggaggagtatccgtacgctgaggttcgccattgggctcaggcg
cagctgtga
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