Pseudomonas brassicacearum DF41: CD58_03560
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Entry
CD58_03560 CDS
T03174
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CD58_03560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbc03400
]
CD58_03560
Enzymes [BR:
pbc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CD58_03560
DNA repair and recombination proteins [BR:
pbc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CD58_03560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AHL32027
LinkDB
All DBs
Position
802664..806116
Genome browser
AA seq
1150 aa
AA seq
DB search
MPDATSLSPAFMVVHGNRLDELRSLVISLMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEDDDSGGCGIAAAIDVQLPGSFMWQLYRTVLGRDEIPAKSLLDKAPLTWRLMRLLPQL
IEQPHFEPLRRFLTHDTDLRKRYQLSERLADLFDQYQVYRADWLEDWAEGRHQTRNVRGE
IKALAPANCWQAELWRALLLDVGAKGMAQSRAGVHQRYLERIHSLESAPKGLPARVIVFG
ISSLPAQALEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKAGMPVVL
DPQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSVFRDGRIDLFSDGSPTTLLSQL
QDDILELRPLNETREHWPAVDTARDGSIRFHVAHSAQREVEILHDQLLAHFSADLTLRPR
DIIVMVPDIDSYAPHIRAVFGQLDRTDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRERFGINEADLPTLHRWIEGAGIRWGMSAEHRAGLGLPAELEQNS
WHFGLRRMLLGYAVGRSGAYEGIEPYDEIGGLDAALIGPLVALLDALEVAHQELTQPASP
QEWGSRLHDLTQLFFQASDEHDDYLLAQLEDLRETWLETCESVGLQDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSAREKLYISWVGRSIRDNSDRPASVLIGQLRDHLANGWQLAD
GSQDLLEALTQEHPLQPFSARYFHQGDELFSYASEWRMLHDAQDQASQSQVLEPYVQEEP
LGLGQLQDFLRNPVRHFFSQRLKVFFEAIEAPLADDEPFVLDALERYSLSDSLLEAALVR
LDQPDLALAAHAKRLQNSGLLPMAGFGECMQRELIEPLPDLLQRYQQLLALWPTPLVSAV
PVSLQLQGVSVEGWLSGLHQRSDGAVLAITAIPNSIGSTKTRKWHRLIRPWVNHLVACAN
GLSMTTALVASDDSLLLAPFEEPVAQRLLSDLLQAWQTGMRQPLPVAVKTAFAWLGQGDP
AKADAAARKAYEGDGQTTEGERRESPALARQFADFDALTADETFPDWCDALYRPLLEAPW
RSSAEGEARS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccggacgcaacgtcccttagcccagctttcatggtggttcacgggaatcgccttgat
gaattgcgcagcttggtgatcagcttgatgcggcgctatccgctggcccctcttgaaaat
gaaatcgcgttggtacagagcaacggtattgcccaatggctcaagctggcactggctgaa
gatccggaagacgatgattccggtggctgcggtattgcggcggccattgatgtgcagttg
ccaggcagcttcatgtggcaactgtatcgaacggtcctggggcgtgacgagattccggcc
aagtccctgctggataaagccccgctgacctggcgactgatgcgcctcctgccgcagttg
atcgagcagcctcatttcgagcctctacgacgattcctcacccacgacaccgacttacgc
aagcgctatcaattgtccgagcgccttgccgatctgttcgaccaatatcaggtataccgg
gccgactggcttgaagactgggcggaaggtcgacaccagaccagaaatgtccgcggcgaa
atcaaagcgcttgcgccggcaaattgctggcaggccgagctttggcgagccttgttgctg
gacgttggagcgaaaggcatggctcaaagccgtgcaggcgttcaccagcgctacctcgag
cgtatccacagcctggaaagcgctccgaaaggcttgcccgcgcgagtgatagtgttcggc
atttcttcgctaccggcccaagccctcgaagcgcttgccggtctgtcacggtttagccag
gtgctgctgtgtgtccataacccatgtcgccaccactgggcggacatcgtggccgacaag
gatttgttgcgtcatcaatacaagcgtcaggcgcgcaaggccggtatgcccgtcgtgctc
gacccgcaaaccttgcatcagcatgctcatccgttattggcagcctggggcaagcagggg
cgcgactatatcaacctgctcgacagctacgatgaccccaacagctatcgctcggtgttt
cgcgatggacgaatcgacctgttcagtgacgggagtcccacgaccctcctcagtcagttg
caagatgacatccttgagctgcgtcctctgaacgaaacccgggaacactggcctgccgtc
gatacggcgcgagacgggtcgatccgtttccatgttgcccacagcgctcagcgcgaagtc
gaaattctccatgaccagttgttggcccacttcagtgcggatctgaccttacgccctcgg
gatatcatcgttatggtcccggacattgacagttacgcgccgcacattcgggcggtgttc
ggccagctcgatagaacggacccgcgcttcattccattcacgttgaccgaccagggccag
cgcggacgcgatccgctgctgatcgccgtcgagcacctgctcaagctgcctgacagtcgc
ttcccagtcagcgaaatccttgatctgctggatgtcccggcgttgcgtgagcgtttcggc
atcaatgaggcagacttgcctacgttgcatcgttggatcgagggtgctggcattcgctgg
ggtatgagcgccgaacatcgcgccgggttgggattgcccgcagagcttgagcagaacagc
tggcatttcggcctgcgtcgcatgttgctggggtatgccgtcggccgttcgggcgcctat
gagggcatcgaaccctatgacgaaatcggcggtctggatgcggccttgatcggtcccctg
gttgccttgctggatgcgctggaagtcgctcatcaagaactgacccagccggcatcaccg
caggaatggggctcgcgtctgcacgatctgacgcagttgtttttccaggcgagcgacgag
catgacgactatctgctggcccaactcgaagacctgcgtgaaacctggttggaaacctgt
gagtcggttggtctgcaggatgaactgccactgacggtggtgcgtgaagcctggctggct
ggattggatcaggggcggttgtcccagcgattcctggccggagcggtcaacttctgtacc
ttgatgccgatgcgcgcgattcccttcaagctggtgtgcttgctggggatgaatgacggt
gattacccgcgcgcccagccgcccctggatttcgaccttatgggcagcgattatcgcccg
ggtgatcgctcacggcgtgaggatgaccgttatctgctcttggaagcgctgttgtcggcc
cgggaaaagctctacatcagttgggtcggacgcagcatccgcgacaacagtgaccggccc
gcatcggtgttgattggtcagctgcgcgatcatcttgccaatggatggcaactggcagat
ggcagccaggaccttctcgaggcactcacccaggagcatcctctgcaaccgttcagcgct
cgctattttcatcagggcgacgagttgttcagttacgccagcgagtggcggatgcttcac
gatgctcaggaccaggcctcccaatcccaggtgctggaaccctacgtccaggaagaaccc
ttgggcctcggtcagttgcaggacttcctgcgcaatcccgtccgccatttcttcagccag
cgactcaaagtatttttcgaggccatcgaagcccccctggcggatgacgagccgttcgtt
ctcgatgcgcttgagcgttacagcctgagcgacagcctgctcgaggccgccctggttcgc
ctggaccagccggaccttgccctggccgcccacgccaaaaggctccagaacagcggtctg
ttacccatggccggtttcggtgagtgcatgcagcgtgaattgatcgagcccttgcctgat
ctgctccagcgttaccaacagcttctggcgctatggcccacgccgctagtcagtgctgtg
ccagtcagcctgcagttgcagggcgtgagcgtcgaaggctggctcagtggcctgcaccag
cgctctgatggtgcagtcctcgccatcacggccatacccaacagcatcggctccaccaag
acccgtaaatggcatcggctgatacggccctgggtcaaccatctggtggcctgcgccaac
ggcctttcaatgacgacagcgctggtggccagtgatgacagcttgctgctggctcctttt
gaagagcccgtggcgcaaaggttgctcagcgatttgttgcaagcctggcaaaccggtatg
cgccaaccgctaccggtcgcggtgaagacagcctttgcctggcttggccagggtgatccg
gccaaagccgatgcggctgctcgaaaagcctacgaaggcgatgggcagaccactgaaggc
gagcgccgggaaagtccggccttggctcgacagtttgctgatttcgatgccttgacggct
gacgaaacattccccgattggtgcgatgcactttaccgcccgttgctcgaagctccatgg
cgttcatcggctgaaggggaggcgcgttcatga
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