Pseudomonas brassicacearum DF41: CD58_04250
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Entry
CD58_04250 CDS
T03174
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD58_04250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbc03019
]
CD58_04250
03016 Transfer RNA biogenesis [BR:
pbc03016
]
CD58_04250
Enzymes [BR:
pbc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CD58_04250
Messenger RNA biogenesis [BR:
pbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CD58_04250
Transfer RNA biogenesis [BR:
pbc03016
]
Prokaryotic type
tRNA degradation factors
CD58_04250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AHL32144
LinkDB
All DBs
Position
980897..983002
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWSWAPQAEA
TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSSAEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccaattcggtcagtcgaccgttaccctcgagaccggc
cgtatcgcccgtcaggcctccggcgcagtgctggtcaccgttgacgacgacgtcagcgta
ttggtgaccgttgtcggtgccaagcaagccgatccaggcaagggtttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggtttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaaaaccgatccggacatcgcagcgatgatcggtacctcggctgccctggccatc
tccggcattcctttcgatggcccgatcggcgctgcccgcgtagcgttccacgaaagcacc
ggctatctgctgaacccaacctacgagcaactgaaagcctcgagcctggacatggtcgtg
gccggtacttccgaagccgtgctgatggttgaatccgaagccaaagagctgaccgaagac
cagatgctgggcgccgtactgttcgcccacgacgagttccaggtggtgatcaacgccgtc
aaggaactggctgccgaggccgccaagccaacctggtcctgggctccgcaagccgaagcc
accgagctgctgggcgctatccgtgccgagttcggcgaagcgatctcccaggcctacacc
atcaccgtcaaggccgaccgttatgcgcgtctgggcgagctgaaagaccaggtggttgcc
aagctgtccggcgaagaaggccagccgtcttccgctgaagtcaaagccgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccgcgtatcgacggtcgc
gacacccgcaccgtacgtccgctgaacatcgaagtcggcgttctgccaaagacccacggt
tcggcactgttcacccgtggcgaaacccaggcgctggtcgttgccacgctgggcaccgcc
cgtgacgcgcaactgctggacaccctggaaggcgaaaagaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggcgccggtcgtcgc
gaaatcggtcacggccgtctggcccgtcgttcggtccaggccatgctgccagccgctgac
gtgttcccgtacaccattcgtgtggtgtcggaaatcaccgagtccaacggctcgagctcc
atggcttcggtctgcggtgcttccctggccctgatggacgccggtgtgccaatgaaggcg
ccggttgccggtatcgccatgggtctggtgaaagaaggcgagaaattcgctgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtggccggtaccgcc
aagggcgtgaccgcactgcagatggacatcaagatcaagggcatcaccgaagagatcatg
gaaatcgccctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcatcggtcagtcccgtaccgagctgtcggaaaatgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccatccgtgcgatc
tgtgaagaaaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggcagaagcagcacgccagcgtgtcctgggcatcactgccgaagcc
gagatcggtaagatctacgtcggcaaggttgagcgcatcgtcgacttcggcgccttcgtc
aacatcctgccgggcaaggacggtctggtccacatctccatgctgagcgatgctcgcgtc
gagaaagtgaccgatatcctcaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaggacgtggctgcagccaaggcatcgggc
gtttaa
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