Pseudomonas brassicacearum DF41: CD58_06125
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Entry
CD58_06125 CDS
T03174
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03030
DNA replication
pbc03430
Mismatch repair
pbc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CD58_06125
03430 Mismatch repair
CD58_06125
03440 Homologous recombination
CD58_06125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbc03032
]
CD58_06125
03400 DNA repair and recombination proteins [BR:
pbc03400
]
CD58_06125
Enzymes [BR:
pbc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CD58_06125
DNA replication proteins [BR:
pbc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CD58_06125
DNA repair and recombination proteins [BR:
pbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CD58_06125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AHL32492
LinkDB
All DBs
Position
1372840..1376361
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG
IKPICGADLWLSNKDPDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGLALLSGNPEEAEVLARDWMAVFPDRFYIEVQRTNRPNDEEH
LHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRPKNYSDQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EDRLRVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIDGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFQDEP
KAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFAEAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKLQTQDLKGDQLRWLGELFKRHRGACPITMEYVRPDAKAV
LQFGEGWRIDPADALIQALRDQFGKDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgagtactccctggtcgatggcctg
gtgcggatcaagccattggtcaagaccctggtgggcatgaacatgcctgccgtggcggtc
accgaccagaacaacatgtgttcgctggtcaagttctacaaggccgcgatgggcgccggg
atcaagccgatctgcggtgccgacctgtggctgtcgaacaaggatccggatgcgccgctg
agccgtatcagcctgttggtgatgaacgccttggggtatcgcaacctcaccgagctgatt
tcccgcggctttatcgatggtcaacgcaatggttcgatcatcatcgagcgcgagtgggtg
gccgaagccagcgaagggttgatcatgctgtcggcggccaaggagggtgaaatcggcctg
gccctgctcagtggcaaccccgaagaagccgaagtcctggcacgcgactggatggcggtg
ttcccggaccgtttttacatcgaagtacaacgcaccaaccgccccaacgatgaagagcac
ctgcacgccgccgtggccctggccgacaagatcggcgcgccactggtggcgaccaatgac
gtgcggttcatcaagcaggaagatttcgaggctcacgaaacccgcgtttgcatcggtgag
ggccgggcccttgacgatccacgccgtccgaagaattacagcgaccagcaatacctcaag
agcgccgaggaaatggccgagttgttcagcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaagcgctgcaacatcgaagtgaagctgggcaagcacttcctgcccaacttc
ccgatccccgatggcatgaccatcgacgagtatttccgcaaggtgtctttcgacggtctc
gaggaccgcctccgcgtcctgctgccaaaggacactactgaagattacgaagccaagcgc
caggtgtatgtcgaccggttgaatttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgtgatggactttatccagtgggccaagaacaacggcgtgccggtg
ggccctggccgtggatcgggcgccgggtcgctggtggcctatgtgcagaagatcaccgac
cttgacccgttggaatatgacctgctgttcgaacgtttcctaaatccggaacgggtatcc
atgcccgacttcgacgtcgacttctgcatggatgggcgcgaccgggtgattgactacgtg
gccgagaagtacggtcgcaacgcggtgagccagatcatcactttcggttccatggctgcc
aaggctgtggtgcgcgacgtggcgcgggtgcagggcaagtcctacgggctggcggatcgt
ctgtcaaagatgattccgttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgggacttcatcaaggtcgatgaagaggccgccgaaatctgggagatggcc
cgcaagctcgaaggcgtggtgcgtaacgtcggcaagcacgccggtggcgtggtgatcgcg
ccgaccaagctgactgacttctcgccaatctattgcgatgaagagggcgacggcctggtc
acccagttcgacaaggatgacgtcgaggcggcgggcctggtgaagttcgacttcctcggc
ctgcggaccctgacgatcatcgactgggcgttgaaaaccatcaaccgtgaccgggccaag
gtgggcgaagagccgctggacatcgccttcatcccgctcgatgacaaaccgacctacagc
ctgctgcaaaaagccgaaaccacggcggtgttccagctggaatcccggggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagacctcatcgcactggtggccctgttc
cgtccgggcccgctgcaatcgggcatggtggatgacttcatcaaccgtaagcacggccgc
gccgaactggcctacccgcactcggattaccagtatgaaggcttgaaaccggtgctggca
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtcatggcc
ggctacaccctcggcggcgcggacatgctgcgtcgggccatgggcaagaaaaagcccgag
gagatggccaagcaacgcggcggtttcattgatggttgcgccaccaacggcatcgaccct
gacctggccggtaacattttcgacctggtggaaaaattcgccggctacggcttcaacaaa
tcccactctgccgcctatggcctggtgtcctaccagactgcctggctgaaggcgcattac
ccggcgccgttcatggccgcggtactctcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcggaccatgaagctgcgcctcgatgccccggacgtgaacgct
tcggagttcaagttcacggtgaacgacgagggccgcatcatctatggcctgggtgcgatc
aaaggcgtaggcgaagggccggtggaggccatcaccgaagcgcgccaggacgggccgttc
aaggacctgttcgatttctgcgcccgggtcgacctcaagcgtatcaacaagcggaccctc
gacggcttgatccgcagtggcgcgctggaccgtctgggtccgtacttccaggatgagccc
aaggcctatcaggccaacatcgaccgcaaccgcgcggtgttgctggcggccatggaagaa
gcgatcaaggccgccgagcagacggcccgtacccacgacagtggccatgccgacctgttc
ggtggcctgttcgtcgaggaagatgccgatgtctacggcaatcatcgcaaggccaaggag
ctgaccctcaaggagcgcctcaaaggtgagaaagacaccttgggcctgtacctgaccggt
cacccgatcgacgagtacgaaggcgagatccgccgtttcgcccgccagcgcatcatcgac
ctcaagccggcgcgcgatacgcaaaccgtcgccgggatgatcattgccctgcgggtgatg
aagaacaagaagggcgacaagatgggcttcatcaccctcgacgaccgctccgggcgcatc
gaggcttcgctgtttgccgaggcgttccactcggcgcagtcgttgttgcagactgacgcg
atggtggtagtggaaggcgaggtcagtaacgacgacttttccggtggcctgcggctgcgg
gtcaagcgggtgatgagcatggaagatgcccgcaccaacctggccgaaagcctgcgcctg
aagttgcagactcaggacctcaagggcgatcagctgcgttggttgggtgaattgttcaag
cgccatcgcggtgcctgcccgatcaccatggagtatgtgcgccccgacgccaaggcggtg
ttgcagttcggcgagggctggcgaatcgatccggcggatgcgttgattcaagccttgcgt
gaccagttcggcaaagacaacgtcttcctccaataccgttga
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