Pseudomonas brassicacearum DF41: CD58_09030
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Entry
CD58_09030 CDS
T03174
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD58_09030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbc03019
]
CD58_09030
03009 Ribosome biogenesis [BR:
pbc03009
]
CD58_09030
Enzymes [BR:
pbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CD58_09030
Messenger RNA biogenesis [BR:
pbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CD58_09030
Ribosome biogenesis [BR:
pbc03009
]
Prokaryotic type
rRNA helicases
CD58_09030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AHL33028
LinkDB
All DBs
Position
1981526..1983199
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERTGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatctcaatccgaacattcttgcagcc
gtcattgcgaccggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggccacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gccctgcctatcctgcatcgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagccaccgctttcgaaacctacgccaagcaa
atgcccggcgttaccgttgtggccgtttacggcggcgccccgatgggcccacaactgaaa
gccatccgtaacggcgcacagatcgttgtcgccactccgggtcgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctggctaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctcggcttcatggatgacctggaagtcatcttcaaggccctgccagccacc
cgtcagactgtattgttctcggccaccctgccgcagtcgatccgagccattgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgtcaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaggatttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaggccgctgcgctgaacggtgacattgct
cagaaccaacgtgagcgcgtcatcgaatccctcaaggatggccgcctggacatcgttgtg
gcaaccgacgtcgccgcccgtggcctggacgttccgcgcatcacccacgtattcaacgtg
gacatgccgtacgatccagaatcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgtgccctgctgctggtcaccccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtgacgggtcagaaggtggctgaagttcgcctgccggacgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcttgtcgccgctggtggctgacgccgaatcg
acccacggtgatctgctggatcgcctgaccgccgacatcggttgcaccccgcgtgccctg
gccgctgctctgctgcgcaaggccaccaatggccaggcgctgaccttggctgcgatcgag
aaggaacgtccactcgtgccgaacagcgcaccacgtggtgaccgtcctgagcgtaccggt
gatcgtccggaccgtggtgatcgcgagcgtcgtgcgccgatcccgctggccgaaggccgt
gctcgctgccgtaccgcgctgggtgcccgtgacggcatcgccgccaagaacctgctgggg
gccatcctcaacgaaggcggcctggcgcgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctggtggaactgccggaagatggtctggagaagttgctgaccaagctgaag
gacacccgcgtagccggcaagcagctcaagctgcgtcgctatcgcgaagattga
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