Pseudomonas brassicacearum DF41: CD58_10035
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Entry
CD58_10035 CDS
T03174
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CD58_10035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbc03400
]
CD58_10035
DNA repair and recombination proteins [BR:
pbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CD58_10035
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CD58_10035
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHL33220
LinkDB
All DBs
Position
2216354..2218369
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFEPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWESVSPQTIFVSATPGNYEAEHAGRVIEQLVRPTGLVDPQ
IEVRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADRMTGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGATV
PGSRSKKRKGMAKAAEESARYEAELRSPSEIAKRIRQLEEKMYQLARDLEFEAAAQMRDE
IGKLRERLLTV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattccagctagtcacccgattcgagcccgccggcgaccagccggaagcgatc
cgcctgatggtcgaaggcatcgaggccgggttggcgcaccagacgctgctcggtgtgacc
ggctcgggcaagaccttcagcattgccaatgtaatcgcccaggtccagcgcccgaccctg
gtgctggcgccgaacaaaaccctggcggcgcagttgtacggtgagttcaaggcgttcttc
ccgaataacgcggtggaatatttcgtctcttattacgactactaccagcccgaggcctac
gtgccgtcgtcggacaccttcattgagaaggatgcctcgatcaacgaccacatcgagcag
atgcggctgtcggcgaccaaggctttgctggagcgcaaggacgccatcatcgtcaccacg
gtgtcgtgcatctacggcctgggcagcccggaaacctatttgaagatggtgctgcatgtg
gatcgcggcgataaactcgaccagcgcgccttgctccggcgcctggcggatttgcagtac
acccgcaacgacatggatttcgcccgggcgacgttccgggtgcgtggcgatgtgatcgac
atctacccggcagagtcggacttggaagcgatccgcatcgagctgttcgacgatgaggtg
gaaagtctttcggcgttcgacccgttgaccggcgaggtcatccgcaagctgccacgcttc
actttctaccccaagagccactacgtgacgccgcgggaaaccctgttggatgccatcgaa
gggatcaaggtcgagctgcaggagcgcttggaatacctgcgctcgaacaacaaactggtg
gaagcccagcgcctggagcagcggactcgcttcgacctggagatgatcctggaactgggc
tactgcaacggcatcgaaaactactcgcgctacctgtcgggccgcccggcgggtgcgccg
ccgcccaccttgtatgactatctgccggccgatgccttgctggtgatcgacgagtcccac
gtcagcgtgccccaggtcggcgccatgtacaaaggcgaccgatcacgcaaggaaaccctg
gtggagtacggtttccgcctgccctcagccctggacaaccggccgatgcgcttcgacgaa
tgggaaagcgtcagcccgcagacgatctttgtctcggccacccccggcaactacgaggcc
gagcatgccggccgggtgatcgagcaattggtgcggccgaccgggctggtggacccgcag
atcgaagtgcgcccggcgctgacccaggtcgacgacctgctctcggaaatcaccaagcgc
gtggcgttggaggagcgggtgctggtcaccacgctgaccaagcgcatgtccgaggacctc
accgattacctggccgaccatggcgtgcgggtgcgttacctgcactcggacatcgatacg
gtggagcgggtcgagattattcgcgatctgcgcctgggcaccttcgatgtgctggtgggc
atcaacttgctgcgcgaaggcctggacatgccggaagtgtcgctggtggcgattctcgac
gccgacaaggaaggtttcctgcgctccgagcgctcgttgatccagaccatcggtcgcgcg
gcgcgtaacctcaatggccgggcgattctttatgccgaccgcatgaccggctccatggag
cgggccatcggcgagaccgagcgccgtcgcgataaacagatcgcgttcaacctggccaat
ggcatcacgcccaaaggggtgttcaaggacgtcgccgacatcatggaaggcgccaccgtg
cccggctcgcgcagtaaaaagcgcaagggcatggccaaggccgccgaagagagcgcccgc
tacgaagccgaactgcgctcgccgagcgaaatcgccaagcgtatccggcagttggaagag
aaaatgtaccaactggcccgggatctggagttcgaagcagcggcgcaaatgcgcgatgag
attggcaagttgcgggagcggttgctgactgtctga
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integrated database retrieval system
