Pseudomonas brassicacearum DF41: CD58_11890
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Entry
CD58_11890 CDS
T03174
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pbc
Pseudomonas brassicacearum DF41
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbc03032
]
CD58_11890
03400 DNA repair and recombination proteins [BR:
pbc03400
]
CD58_11890
Enzymes [BR:
pbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CD58_11890
DNA replication proteins [BR:
pbc03032
]
Prokaryotic type
DNA Topoisomerases
CD58_11890
DNA repair and recombination proteins [BR:
pbc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CD58_11890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AHL33556
LinkDB
All DBs
Position
complement(2598875..2599912)
Genome browser
AA seq
345 aa
AA seq
DB search
MPDTLPPDALPADLHYVDDTAPGITRKKLRGKFCYFDPQGQRITDAAEIQRINALAVPPA
YSDVWICADPRGHLQATGRDARGRKQYRYHARWREVRDADKYSRMLEFGRTLPRLRKRLE
EILAKPGFSRDKVMATVITLLDLTLIRVGNTQYARDNHSYGLTTLRSKHVEVNGSAIAFQ
FRGKSGVEHQITVKDRRLARIIKRCQEIPGQNLFQYLDENGERHSVSSSDVNAYLKSLTG
ADFTAKDYRTWAGSAAALAGLRMLAWETETEAKKHVTEMVRQVARQLGNTPTVCRKCYIH
PAVVEAFLLGALRQLPKPRLRKGLSEEDAALAMFLQRMTEAAEAC
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacaccctgccgccggatgcactgccggccgacctgcattacgtcgacgacacc
gccccgggcatcacccgcaagaaattgcgtggcaagttctgttacttcgacccacagggc
caacgtattaccgacgccgccgagatccagcgcatcaatgccctggccgtgccgccggct
tacagcgatgtgtggatttgcgccgacccgcgcggtcatctccaggccaccggccgcgat
gcccggggccgcaagcagtaccgctaccatgcgcgctggcgtgaagtgcgcgatgcggac
aaatattcacggatgctggaattcggacgcaccctgccgcgcttgcgcaaacgcctggag
gaaatcctggccaagcccgggttcagccgcgacaaggtcatggccaccgttatcaccctg
ctggacctgaccctgatccgagtcggcaacacccaatacgctcgcgacaatcactcctac
ggcttgacgaccctgcgcagcaagcatgtggaagtcaacggcagtgccatcgctttccag
ttccgcggcaagagcggcgtcgaacaccagatcaccgtgaaagaccgacgcctggcacgc
atcatcaagcgctgccaggagatccccggacagaacctgttccagtacctggacgaaaac
ggcgagcgtcactccgtcagttcttcggacgtcaacgcttacctcaagagcctcaccggc
gccgacttcaccgccaaggactaccgcacctgggccggcagtgcggcggcgctggccggg
ctgcggatgctggcctgggaaaccgagaccgaggcgaaaaaacacgtcaccgagatggtc
aggcaggtcgcccggcaactgggcaacacgccgaccgtctgtcgcaagtgctacattcat
cctgcagtggtggaggcttttctgctcggcgccttgaggcaattgcccaagccccggctg
cgcaaaggcctcagcgaagaggacgccgcattggcgatgtttttgcagcgcatgaccgaa
gccgccgaagcgtgctaa
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