Pseudomonas brassicacearum DF41: CD58_21430
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Entry
CD58_21430 CDS
T03174
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD58_21430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbc03019
]
CD58_21430
03009 Ribosome biogenesis [BR:
pbc03009
]
CD58_21430
Enzymes [BR:
pbc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CD58_21430
Messenger RNA biogenesis [BR:
pbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CD58_21430
Ribosome biogenesis [BR:
pbc03009
]
Prokaryotic type
rRNA processing factors
CD58_21430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AHL35275
LinkDB
All DBs
Position
4846882..4850091
Genome browser
AA seq
1069 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAAATRTLVRQEAAVKTAPARANAPVP
TEVAAPVAAPAAAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPAATERPARNEERRNG
RQQTRNRNGRRDEERKPREERAPREERAPREPREERQPREAREEAPAAVAREERAPRPPR
EERQPRAPREDRKPRGEREERVRELREPLDAAPAVAAATTEERPARQPREERAPRPPREE
RQPRAEQAAAAASEEEVLNTEEQLLEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDANGN
VIEGSEESESAENAEAPSAADLAAGLAVTAAVASSNISAPAEAEANEQAERATAAVENAP
VEAPVVEATTPVDATASPEVELAPARETQPGAEAAVEPAPVIEQPMVAAEPVVEAAFETP
AEEKAPEPAREEQTAFNWTAEPVAPASVVEPEPTPEPVKAVEPEVVEPAPVVEAPVVVEA
PVPVEEPAPASALTANGRAPNDPREVRRRKREAERLQKEAEQAAAAAAHAPVAEPTPVVE
EVAEAAPAPVAETPVESAPTFDEPQHTAEEIAPRHTEALEKAHEPKPHA
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagac
ggccagcgcctctacgacctggatatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccgagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgagtacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgaaaaagaagaacgtggcaacaagggtgcagccctgaccaccttcatcagcctg
gccggtcgttacctggtcctgatgccgaacaacccgcgtgccggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagccctgaacggcctggttgcaccggcc
gacatgggcctgatcgttcgcacggccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctcc
gcgccgttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgacc
ttcattcgccaggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtc
gaactgccgtccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagcggccgaagaaatcgcccgtcagttgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtacaggtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccgtccctgggcgaaagcagcggcatcgtc
tgcccgcgttgcaatggcaccggcatcattcgtgacgtcgagtcgttgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcgcaagtg
ccgatcccggtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgag
ctgcgcacccgggcccgtatcgtcatcctgccgaacgaccacctcgagacgccgcacttc
gaagtgcagcgcctgcgcgatgacagcccggaagcccacaccaaccagtccagctacgag
atcgccgcagccgctgccgaagtggaagaagtccagccagctgccgccgccacccgcacc
ctggttcgtcaggaagcagcggtcaagactgccccggcccgcgccaacgctccggtcccg
accgaagtggccgctccggttgccgccccggccgccgcaccagaaccaagcctgttcaaa
ggcctggtgaagtccctggtcagcctgttcgccaccaaggaagagcctgcagcgccagcc
gttgtcgccaagccagccgctaccgagcgtcctgcccgcaacgaggagcgccgcaacggt
cgccaacagacccgcaaccgtaacggtcgccgcgatgaagagcgcaagccccgcgaagaa
cgtgcaccgcgtgaagaacgcgcaccacgtgagccgcgtgaagaacgccagcctcgcgaa
gcccgtgaggaagccccagcagccgtagcccgcgaagaacgcgcaccgcgtccgccgcgt
gaagagcgtcaaccacgcgcccctcgtgaagatcgcaagccacgtggcgagcgtgaagaa
cgtgttcgcgaactgcgcgagcctctggatgccgctccggccgttgccgccgccaccact
gaagagcgtccggcccgccaacctcgtgaagagcgcgcaccgcgtccgccacgtgaagag
cgtcagccacgcgctgagcaggcagccgccgctgccagcgaagaagaagtgctgaatacc
gaagagcaactgctggaagatggtcaggacaacgccgaaggtgatcgtccacgccgccgc
tcccgtggtcagcgtcgtcgcagcaaccgtcgtgagcgtcagcgtgacgccaatggcaac
gtgatcgaaggttcggaagaatccgaatccgccgagaacgctgaagcaccaagcgctgcg
gacttggctgcgggcctggccgtgactgcggcagttgccagcagcaacatcagcgcccct
gccgaagccgaggcgaatgagcaggcggagcgtgctaccgctgcggtggaaaacgcgccg
gttgaagcccccgtggtcgaagccactaccccggtagacgccaccgcgtcgccagaagtg
gaactcgccccggctcgcgaaacccagcctggagccgaagccgccgtcgagccggcaccg
gtcatcgagcaaccaatggttgccgctgagcctgtcgtcgaagcggccttcgagacaccg
gccgaggaaaaagcaccggagcctgcccgtgaagagcaaactgcgttcaactggaccgcg
gagcccgtcgcaccggcgtccgttgtcgagccagagccgacaccagaaccggtgaaagcg
gtcgaacccgaagtggtcgagccggctccagtggtcgaagcccctgtggttgtcgaagca
ccggtcccggtggaagagcctgcacctgccagcgccctgaccgcgaacggccgtgcgccg
aacgatccgcgcgaagtgcgccgtcgtaagcgtgaagccgagcgtctgcagaaggaagcc
gaacaagctgccgctgccgccgctcatgcgcctgttgccgagccaactccagtcgtggaa
gaagtcgccgaggcagcccctgccccggtcgccgaaaccccggttgagtcggctccgacg
ttcgacgaacctcagcacactgctgaagaaatcgcgccgcgtcacactgaagccctggaa
aaagcgcacgagcctaaacctcacgcctga
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