Pseudomonas brassicacearum DF41: CD58_25560
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Entry
CD58_25560 CDS
T03174
Name
(GenBank) diguanylate phosphodiesterase
Organism
pbc
Pseudomonas brassicacearum DF41
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
PAS_3
PAS_8
dCache_1
Motif
Other DBs
NCBI-ProteinID:
AHL36024
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Position
5730703..5734551
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AA seq
1282 aa
AA seq
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MSKVTPSLSPRAPTGVPSAPLRGTLKSALATLVLVLLGLLFWQLLDQLRETQQQQRQYTI
EYTADLAAQVSLNMALNAQIALNLLPIVEQPQTTDEQQALLRKLQQSLPELRSLVLLSPS
GKVLSDSAADSQDADYLSELVRRSRAQAHYFSNAKDGSVVHLLLHQATGSTRGYWALRLS
PSFFSTLTKQADVGLRPLWLVENRLDQQIISRDEGLTSARPAYLSPDDLSNTVLTVPLSS
SDWQLRGLFDQRQVIEQLLPAFIGKCLLGLAFSMLPVLALLNTRRRQRQLHEGRRRYQDI
FEGTGVALCVLDLSGLKAFFDRAGLHNGDQLRAWVERPHQFEQLRQEVQVTEVNQMALKL
LNVDSCEEAWQLLVGKGPQDNNPIGSKLLEALLDPHKQLELEIKLQDAHGRDQHLWLVLR
LPEKQQDYNAVILSISDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSN
HHLGQTLGYDRTELHQMGEYFWEILLHSEDAEHYHNLRQEQRRGGYTQLLQCQLRFRHRN
GKWRCFDIREQALARDRHNQVTRIIGVAKDVTEQIEASESLRDSEQRYRMLAESISDVIF
STDNKLSLNYVSPSVQAVLGYNADWIFQNGWQSIIANPQQLTGIYTLMDRVSKALDIPEQ
LAELRNQLQTQLFLFDCLRADGRKIPIELRLVLVWDDNGGFEGVLGVGRDISQQRRAEKD
LRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSQVLDQLPNMLTVDDQQEAHL
RYVLKQLQQHSTWEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVCFFSDISERKASE
QRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKTWVVLMFLDLDRFKPINDSLGHAA
GDRMLKEMATRLLGCVADDDTVARMGGDEFTLLLQPRASREMALNRAITVAEQILASLVR
PFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNFQFYQADMNASA
LERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRGLVPPGDFIPVL
EELGLVVDVGDWVITEACRQLRTWHQAKVRVPKVSVNISARQFSDGQLGTRIANILRSTG
LPPACLELELTESILMREVSEAMQILDGLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLK
IDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLF
GRPMPATRFEAQFSNDALFMLD
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaagtcacgccgtccctgtccccacgagcaccgactggtgtgcccagcgccccc
ctgcgcgggacattgaagagcgcgctggccacgctggtgctggtgttgctcggattgctc
ttctggcagttgctcgaccaactgcgcgaaacccagcagcaacagcgccaatacaccatc
gaatacaccgccgacctggccgcgcaagtcagccttaacatggccctgaacgcgcaaatc
gccctcaatttgctaccgatcgtcgaacaaccgcaaacgaccgacgaacagcaggccctc
ttgcgcaaactccagcaatcgttgcccgagctgcgcagcctggtcttgctgagcccgtcc
ggcaaagtgctcagcgacagcgcagccgacagccaggacgccgactacctgagcgaactg
gtgcgccgcagtcgtgcccaggcgcactatttcagcaatgccaaagacggctccgtggtg
catctgctgttgcaccaggccactggcagcacccgcggttactgggccctgcgcctgtct
ccaagctttttctcgaccctgaccaaacaggccgatgtgggcttgcgcccgttgtggctg
gtggagaaccgtcttgaccagcagatcatcagtcgcgatgaaggcctgacctcggctcgc
cctgcctacctatcgccggatgacctgagcaacaccgtgctgaccgtgcccttgagcagc
agtgactggcaactgcgcgggctgttcgaccaacgccaggtgatcgagcaactgctaccg
gccttcatcggcaagtgcctgctgggcctggcattttcaatgctgccggtgctcgcgtta
ctgaatacgcgccgacgccagcgccagttgcacgaaggtcgtcgtcgctaccaggatatt
ttcgaaggcaccggcgtggccctgtgtgtgcttgacctgtctgggctcaaggcctttttt
gacagggccggcctgcacaacggcgatcaattgcgagcctgggtggaacgtccgcaccag
ttcgagcagctgcgccaggaagtgcaggtcaccgaagtcaatcagatggcgctgaagctg
ctcaacgtcgattcctgcgaagaagcctggcaattgttggtcggcaaaggaccgcaggac
aacaaccccatcggctcgaaactgctcgaagcgctgctcgacccgcacaaacagctggaa
ctggagatcaagctccaggatgcccatggccgcgatcaacacctctggctggtactgcgc
ctgccggaaaagcagcaagactataacgccgtcatcctgagcatcagcgacatcaccagc
cgcaagctgatcgagctctcgctgcttgaacgcgaaggtttctggtccgacgtggtgcgc
accgtgccggatcatctctacgtgcaggacgtcatcagccagcggatgatcttcagcaac
catcacctgggccagaccctggggtacgaccgtaccgaactgcaccagatgggcgagtac
ttctgggaaatcctgctacacagcgaagatgccgagcactaccacaacctgcgccaggaa
caacggcgcggcgggtatacacaactgctgcaatgtcagctgcgctttcgccatcgcaac
ggcaaatggcggtgtttcgacattcgcgaacaggcactggcccgggaccggcacaaccag
gtgacacggatcatcggcgtggccaaggacgtcaccgagcagatcgaggccagcgaatcg
ctgcgcgacagcgagcaacgctaccgaatgctcgccgaaagcatcagcgacgtgattttc
tccaccgacaacaaactctcgctcaactacgtcagcccctcggtacaagcggtgctgggc
tacaacgccgattggatcttccaaaacggctggcaatcaatcattgccaatccgcaacag
ttgaccggcatctacaccttgatggaccgcgtcagcaaggctctcgacattcccgagcaa
ctggccgaactgcgcaaccagctacaaacccagctgttcctgttcgactgcctgcgtgcc
gacgggcgcaagatccccatcgagttgcggctggtgctggtgtgggatgacaacggtgga
ttcgaaggcgtgctcggcgtcggccgcgacatcagccagcagcggcgcgccgaaaaagac
ctgcgcatggccgccacggtgttcgagcactcgacctcggcgattctgatcaccgacccg
gctggctatatcgtccaggccaacgaagccttcagccgcgtcagtggttatgcggtgtcg
caagtgctggaccagttgcccaacatgctgaccgtggacgaccagcaggaagctcacttg
cgctacgtgctcaagcagttgcaacagcacagcacctgggagggcgaggtctggctcaag
cgccgcaatggcgaacactatccggcctgggtcggcatcacggcggtactggacgatgaa
ggcgatctggccagctacgtgtgcttcttcagcgacatcagcgaacgcaaggccagcgag
cagcgtatccatcgcctggcctactacgacgccctgacccacctgcccaaccgcacgctg
ttccaggatcgcctgcacactgccttgcaatcggccgaaaggcagaagacctgggtggtg
ctgatgttcctcgacctggaccgtttcaagccgatcaacgactccctgggccacgccgct
ggcgaccggatgctcaaggaaatggccacgcggctgctcggctgcgtggccgacgacgac
accgtggcacgcatgggcggcgacgagttcaccctgctgctgcaacctcgggccagccgg
gaaatggcgctgaaccgggcgattaccgtggccgagcaaatcctcgccagcctggtccgg
ccattcgtgctcgaaggccgggagttcttcgtcaccgccagtatcggtatcgccctgagc
ccccaggacggcaacgagctgagccaactgatgaaaaacgccgacacggccatgtatcac
gccaaggaacgcggcaagaacaacttccagttctatcaagccgacatgaacgccagcgcc
ctggagcggctggaactggaaagcgacctgcgccatgccctggaacagaacgagttcgtg
ttgtattaccaaccgcagttcagcggcgatggcaaacgtttgaccggcgccgaggccctg
ttgcgctggcgtcatccacgccgtgggctggtgccgccgggggatttcatcccggtgctc
gaggaactcgggctggtggtggacgtcggcgattgggtcatcaccgaggcctgccggcaa
ctcaggacttggcaccaggccaaggtccgggtgccgaaggtctcggtcaacatttcggcc
cggcagttctccgacggccaactcggcacgcgaatcgccaatatcctgcgcagcactggc
ctgccaccggcctgtctggagctggaactgactgaaagtatcctgatgcgtgaagtcagc
gaagcgatgcagatcctggacggcctgaaaaacctgggcctgagcatcgcggtggatgac
ttcggcaccggctattcgtcgctcaactacctcaagcagtttcccatcgacgtgctgaag
atcgaccgtacctttgtcgatggcctgccgtcaggcgaacaggatgcccagatcgcccgg
gcgatcatcgccatggcccacagcctcaacctggcggtgattgccgaaggtgtcgagacc
cacgaacaactggaattcttgcgcgagcacggttgcgacgaagtccaaggctacctgttc
ggccgcccaatgccggccacccggttcgaagcgcagttcagcaatgatgcgttgttcatg
ctcgactga
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