Pseudomonas brassicacearum DF41: CD58_25805
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Entry
CD58_25805 CDS
T03174
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pbc
Pseudomonas brassicacearum DF41
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbc03019
]
CD58_25805
Enzymes [BR:
pbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CD58_25805
Messenger RNA biogenesis [BR:
pbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CD58_25805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
AAA_30
AAA_22
HA2_N
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHL36071
LinkDB
All DBs
Position
complement(5783036..5785552)
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AA seq
838 aa
AA seq
DB search
MISLPIDEVLPALRQALASRHEAVLEAPPGAGKTTRVPLALLNEPWLTGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRELFREDQPLKILLMSATLEGERLAGLLDDAPILRSE
GRMFPVTVRWGRPFQPGEFIEPRLVQTVLDALHDETGSVLVFLPGQAEIRRVHQQLADAL
GEGGNVLLCPLHGELDLAAQRAAIDPAPPGQRKVVLATNIAETSLTINGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEQLAAYGSAEILS
ADLAGLALQLGRWGVTPQQLVWLDVPPAAAYAQAQDLLQRLGALEGEQLTRHGQSMAELP
AHPRIAHLLLRGQALGLADMACNVAALLGERDILRGAGADLHSRLVLLSGEERAARGAQG
GVQRARQLARQYRGYLRGKPQEAVADPDHPRWLGALLALAYPDRVAQQRRPGGAEYRLAN
GRAALFAEADSLMKQAWLVIADLGSRQGQREERIYLATDFDPALFDSVLAEQVRVVDQLD
WDEREGVLRAERQRKVGELVLSREALTGLDESARSQALVNLVRRKGLELLPWTPELRQWQ
ARVALLRRLELDAKGESEWPDVSDAALLNTLEHWLMPYLGRVSRLSHFANLDLSSIVHNL
LPWPLPQRLDEQAPHHLSVPSGSSIRLDYSEHPPILAVRLQELFGLADTPRIAGGRQVVK
LHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARVKPRK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgatttctttgccgattgatgaagttttacccgccctgcgtcaagccttggcgtcgcgc
cacgaagcggtgctcgaagcaccgcccggcgccggtaaaaccacccgcgttcccttggcc
ctgttgaacgagccctggctgaccgggcagaccatcctgatgctcgaaccccgacgcctg
gcggcgcgggcggcggccgagcggctggctagcgagctgggggaaaaggtcggtgaaacg
gtgggctaccggattcgcctcgacagcaaggtcggccccaagacgcgcattgaagtggtc
accgaaggcatcctcactcgccgcttgcaggatgatccggcgctggaaggggtggggttg
ctgattttcgatgagttccacgaacgcagcctcgatgccgacctggccctggccttgagc
ctcaacggccgcgagctgtttcgcgaagaccaaccgctgaagatcctgctgatgtccgcc
accctcgaaggcgagcgcctggccgggttgctggacgacgcgccgatcctgcgcagcgaa
gggcgtatgtttccggtgacggtgcgctggggccggccgttccagcccggtgaattcatc
gagccgcgactggtgcagaccgtgctggacgcgctgcacgacgaaaccggcagcgtgttg
gtgttcttgcccgggcaagcggagatccgtcgggtgcatcagcagttggccgatgccttg
ggcgagggcggcaacgtgttgctctgcccgctgcatggcgaactggatctggcggcccaa
cgcgccgccatcgacccggcgccgcccggtcagcgcaaagtggtgctggccaccaacatc
gccgaaaccagcctgaccatcaacggcgtgcgggtggtgatcgacgccgggttggcccgg
gtaccgcgtttcgatccgggcagcggcatgacccgtctcgacacccagcgcatttcccgg
gccagtgccacgcagcgggccggtcgagccgggcgcctggagccaggggtatgttatcgg
ttgtggtctgaagaccagcacgaacaattggccgcctacggcagcgcggaaattctttcg
gcggacctggccggcttggccctgcaactggggcgctggggcgtgacgccgcagcaattg
gtctggctcgacgtgccgcccgccgccgcttatgcccaggcccaagacctgttgcaacgc
ctcggcgcgctggagggcgagcaattgacccgccacggccagtccatggccgagctgcct
gcccacccgcggattgcccatttgctgctgcgcggtcaggcgctggggctggcggacatg
gcgtgcaacgtcgcggcgttgttgggcgagcgcgatattctcaggggcgcgggcgcggac
ttgcacagtcgtttggtgttgctgtccggcgaagaacgcgcggcgcggggcgcccagggc
ggcgtgcagcgggcgcgacaattggctcggcagtatcgcggttacctgcggggcaagccc
caggaagccgtcgccgatcccgatcacccgcgctggcttggtgcgttgctggcgttggcc
tatccggaccgcgtcgcccagcagcgccggcccggcggtgcggaatatcgcctcgccaat
gggcgtgcagcgttgtttgccgaggccgacagcctgatgaaacaagcgtggctggtgatc
gccgacctgggcagccgtcagggccagcgggaagaacggatctacctggcgacggatttc
gacccggcgctgttcgattcggtactggccgaacaagtccgcgtggtggatcaactggat
tgggacgagcgcgaaggcgtgctgcgggccgagcgccagcgcaaggtcggcgaactggtc
ctcagccgcgaggcactgactggcctggacgagtccgcccgcagccaggcgctggtgaac
ctggtgcgacgcaaaggcctggagttgctgccttggactccggaattgcggcagtggcag
gcacgggtggcgttgttgcgtcggcttgagctggacgccaagggcgagagcgaatggcca
gacgtcagcgacgcagcgctgctgaacaccctcgaacactggttgatgccgtacctggga
cgcgtttcgcgcctcagtcatttcgccaacctggacctgtcgagcatcgtccacaacctg
ttgccctggccgttgccgcaacgcctggacgaacaggcaccccatcatttgagtgtgccc
tcgggctcgtcgattcgcctggactacagcgagcatccaccgatcctggcggtgcgcttg
caggaactcttcggcctggccgacaccccgcgcattgctggcgggcggcaggtggtcaag
ctgcacctgctgtcaccggcgcgccggccggtgcaggtgacccaggatttggcgaacttc
tggcgcagcacgtatgccgaggtgaagaaggatttgaaggggcgttatcccaagcattac
tggccggatgatccgctggtggcggaggcgacggcgcgggtcaagccgcgtaagtaa
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